Fractal LIF Converters
A collection of Fractal tasks
to convert Leica .lif files into OME-Zarr
format.
Tasks
| Task | Use case |
|---|---|
Convert Lif Plate to OME-Zarr |
Convert a .lif containing a plate-shaped tile-scan into an OME-Zarr HCS plate. |
Convert Lif Image to OME-Zarr |
Convert a single image (single-position, multi-position, or mosaic) into a standalone OME-Zarr image. |
Each task is a Fractal compound task: an init step parses the .lif
metadata and builds the parallelization list, and a compute step writes the
image data well-by-well (or scene-by-scene).
Installation
pip install fractal-lif-converters
Part of the OME-Zarr converters ecosystem
This converter is a thin, format-specific layer built on
ome-zarr-converters-tools,
the shared engine that handles tiling, image registration, and OME-Zarr writing for
the whole Fractal converter family. Because they all share that engine, every
converter offers the same options, behavior, and development workflow.
Sibling converters built on the same tooling:
fractal-czi-converters— Zeiss.czifractal-nd2-converters— Nikon.nd2fractal-uzh-converters— HCS plates (Operetta, ScanR, CQ3K, CellVoyager, ImageXpress, custom TIFF)
Documentation
Full documentation — including the supported file layouts, all converter parameters, and the condition-table format — is available at https://fractal-analytics-platform.github.io/fractal-lif-converters/.
1 maintainer
Metadata
1 maintainer
Release files for fractal-lif-converters 0.7.0
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| File | Size | Uploaded | Provenance | Actions |
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