PyFilesystem2 AnVIL plugin
Project description
PyFilesystem2 AnVIL plugin
A plugin for representing AnVIL resources in Python environments as a file system; particularly, in an AnVIL-launched Galaxy instances.
Galaxy installation requirements:
file_sources_conf.yml
in the Galaxy config directory with an AnVIL entry:
- doc: <whatever you would like to call it>
id: <root folder name>
namespace: <your google billing project == Terra namespace >
type: anvil
workspace: <name of the Terra workspace you wish to browse>
api_url: <OPTIONAL - if not specified default production url will be used>
on_anvil: <OPTIONAL - (true/false) must be true to manage AnVIL workload identity scopes>
drs_url: <OPTIONAL - if not specified default production url will be used>
writable: <OPTIONAL - (true/false) if not specified plugin will be read-only>
NOTE: doc
and id
can be any string you choose but type
MUST be anvil
lib/galaxy/files/sources/anvil.py
- see included
anvil.py
- see included
Dependency requirements:
- FISS -- (Fi)reCloud (S)ervice (S)elector python library
- Google Cloud Python client library
- Google Cloud SDK
- configured with AnVIL project
- gs-chunked-io
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