fusion-tools 0.0.3

Utility functions for generating, saving, and converting annotation files

fusion-tools

Some utilities, accession, and visualization tools for data derived from FUSION (Functional Unit State Identification in WSIs).

Installation

$ pip install fusion-tools

Usage

fusion-tools is intended to bring some of the functionality found in FUSION to developers working with whole slide images (WSIs) stored locally.

One such example would be the TileServer and LocalSlideViewer class:

from fusion_tools.visualization import TileServer, LocalSlideViewer

import threading

path_to_slide = '/path/to/wsi.svs'

tile_server_port = '8050'
tile_server = TileServer(
    local_image_path = path_to_slide
)

new_thread = threading.Thread(target = tile_server.start, name = 'tile-server', args = [tile_server_port])
new_thread.daemon = True
new_thread.start()

slide_viewer = LocalSlideViewer(
    tile_server_port = tile_server_port,
    app_port = '8080'
)

Contributing

please

License

fusion-tools was created by Samuel Border. It is licensed under the terms of the Apache 2.0 License