A Python SDK tool for auditing gear run data
Project description
fw-gear-audit
A Python SDK tool for auditing gear run data
Use this tool to fetch data from Flywheel describing which gears have been run within a project and how they were configured. You can also join SeqInfo data to help filter your data by sequences.
usage: fw-gear-audit [-h] --project PROJECT [PROJECT ...]
[--subject SUBJECT [SUBJECT ...]]
[--session SESSION [SESSION ...]] [--verbose]
[--dry_run] (--path PATH | --fname FNAME)
(--by-runs | --by-sequences)
Goal
You can run many analysis gears on Flywheel. Keeping track of these within a subject is easy with the GUI, but to view this data en masse requires the use of the SDK to loop over each subject and collect their gear run data. This becomes troublesome when, for example with fMRIPrep, there can be many runs of the same gear due to version updates, feature testing, incorrect configs, or random errors causing gears to crash.
This leaves users in a situation where they may not be sure if the correct version and configuration of fMRIPrep was run successfully for 100% of the participants in their 200-cohort study.
fw-gear-audit
aims to remedy this situation by quickly and efficiently gathering data about gear runs and providing the user with a tabular .csv
file for their records.
Features
- Use the
--subject
and--session
flags to filter your data within project by subject or session labels. - By default, gear run data includes the gear name, version, runtime and date, and completion status. Use the
--verbose
flag to output both gear run data and configuration information for each run - Choose between
--by-runs
to output a table where each row is a gear run, or--by-sequences
to output a table where each gear run is accompanied by aseqInfo
subtable
By Run:
subject | session | gearName | gearVersion | runLabel | runDatetime | runRuntimeMS | runStatus |
---|---|---|---|---|---|---|---|
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-15 20:45:24.774000+00:00 | 63361 | failed |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-16 16:27:02.664000+00:00 | 15829 | failed |
104059 | 10762 | fmriprep125 | 0.1.7_1.2.5 | fmriprep_SDK_010762_2019-04-22_17:32 | 2019-04-22 21:33:25.870000+00:00 | 14055 | failed |
104059 | 10762 | fmriprep125 | 0.1.7_1.2.5 | fmriprep_SDK_010762_2019-04-24_11:31 | 2019-04-24 15:36:34.178000+00:00 | 287719 | failed |
104059 | 10762 | fmriprep125 | 0.1.7_1.2.5 | fmriprep_SDK_010762_2019-04-24_16:45 | 2019-04-24 20:45:21.188000+00:00 | 55392635 | complete |
104059 | 10762 | xcpengine-fw | 1.063 | XCP_SDK 2019-05-17 11:35:54.021070 | 2019-05-17 15:35:54.085000+00:00 | 5553043 | complete |
104059 | 10762 | xcpengine-fw | 1.0633 | XCP_SDK 2019-06-17 16:44:12.682716 | 2019-06-17 20:44:12.754000+00:00 | 312121575 | failed |
104059 | 10762 | xcpengine-fw | 1.06338 | XCP_SDK_task_module_2019-06-26 13:08:13.199392 | 2019-06-26 17:08:13.274000+00:00 | 28015 | complete |
104059 | 10762 | xcpengine-fw | 1.06338 | XCP_SDK_taskregress_module_2019-06-26 19:10:02 | 2019-06-26 19:10:02.888000+00:00 | 27375 | complete |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep125 04/05/2019 14:59:38 | 2019-04-05 19:00:04.294000+00:00 | 73752452 | complete |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_11196 | 2019-04-15 20:45:35.356000+00:00 | 44505363 | failed |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_11196 | 2019-04-16 16:27:13.458000+00:00 | 44010936 | failed |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep125 04/17/2019 11:33:10 | 2019-04-17 15:33:57.530000+00:00 | 30092 | failed |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep125 04/17/2019 12:36:44 | 2019-04-17 16:37:15.579000+00:00 | 73098331 | complete |
86486 | 11196 | fmriprep125 | 0.1.7_1.2.5 | fmriprep_SDK_11196_2019-04-22_17:32 | 2019-04-22 21:33:36.983000+00:00 | 16347 | failed |
86486 | 11196 | fmriprep125 | 0.1.7_1.2.5 | fmriprep125 04/23/2019 16:07:28 | 2019-04-23 20:07:49.717000+00:00 | 17150 | failed |
86486 | 11196 | fmriprep125 | 0.1.7_1.2.5 | fmriprep125 04/23/2019 16:17:26 | 2019-04-23 20:17:45.532000+00:00 | 65726568 | complete |
86486 | 11196 | fmriprep125 | 0.1.7_1.2.5 | fmriprep_SDK_11196_2019-04-24_11:31 | 2019-04-24 15:36:42.723000+00:00 | 52406897 | complete |
86486 | 11196 | xcpengine-fw | 1.063 | xcpengine-fw 04/27/2019 19:33:41 | 2019-04-27 23:34:13.359000+00:00 | 4775298 | complete |
86486 | 11196 | fw-heudiconv | 0.1.11_0.1.0 | fw-heudiconv 05/10/2019 15:14:42 | 2019-05-10 19:14:57.904000+00:00 | 14759 | complete |
86486 | 11196 | xcpengine-fw | 1.063 | xcpengine-fw 05/15/2019 10:37:09 | 2019-05-15 14:37:37.681000+00:00 | 320600623 | complete |
86486 | 11196 | xcpengine-fw | 1.063 | xcpengine-fw 05/15/2019 10:37:44 | 2019-05-15 14:43:11.425000+00:00 | 318911954 | complete |
86486 | 11196 | xcpengine-fw | 1.063 | xcpenginestruct 05/25/2019 19:14:49 | 2019-05-25 23:15:35.105000+00:00 | 322438769 | complete |
86486 | 11196 | xcpengine-fw | 1.0631 | xcpengine-fw 06/13/2019 12:59:24 | 2019-06-13 17:00:03.867000+00:00 | 1457 | failed |
86486 | 11196 | xcpengine-fw | 1.0633 | XCP_SDK 2019-06-17 16:45:31.934948 | 2019-06-17 20:45:32.002000+00:00 | 316570122 | failed |
86486 | 11196 | xcpengine-fw | 1.06336 | xcpengine-fw 06/25/2019 14:50:03 | 2019-06-25 18:50:46.914000+00:00 | 31014 | complete |
86486 | 11196 | xcpengine-fw | 1.06337 | xcpengine-fw 06/25/2019 15:41:09 | 2019-06-25 19:42:04.137000+00:00 | 1030893 | complete |
86486 | 11196 | xcpengine-fw | 1.06337 | xcpengine-fw 06/25/2019 15:56:22 | 2019-06-25 19:57:17.108000+00:00 | 1534523 | complete |
86486 | 11196 | xcpengine-fw | 1.06338 | XCP_SDK_task_module_2019-06-26 13:08:18.700338 | 2019-06-26 17:08:18.774000+00:00 | 1562030 | complete |
86486 | 11196 | xcpengine-fw | 1.06338 | XCP_SDK_taskregress_module_2019-06-26 19:10:09 | 2019-06-26 19:10:09.688000+00:00 | 1031698 | complete |
86486 | 11196 | xcpengine-fw | 1.06339 | xcpengine-fw 07/02/2019 12:38:10 | 2019-07-02 16:39:02.284000+00:00 | 1292985 | complete |
This allows you to filter, for e.g., which subjects successfully ran XCPEngine with version 1.06338
# Tidy R syntax:
df %>%
filter(str_detect(gearName, 'xcpengine')) %>%
filter(str_detect(runStatus, 'complete')) %>%
filter(str_detect(gearVersion, '6338'))
By Sequences
This option creates a data frame where each run above is also joined by a sequence info table for that participant:
subject | session | gearName | gearVersion | runLabel | runDatetime | runRuntimeMS | runStatus | seriesID | dcmDirName | dim1 | dim2 | dim3 | dim4 | TR | TE | protocolName | isMotionCorrected | isDerived | seriesDescription | sequenceName | imageType | seriesUid |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-15 20:45:24.774000+00:00 | 63361 | failed | 5c75633aba2580002d3902e6 | Localizer_1_i00003.nii.gz | 512 | 512 | 3 | -1 | 0.0086 | 0.004 | Localizer | False | False | Localizer | _fl2d1 | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.2018041814140178131880096.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-15 20:45:24.774000+00:00 | 63361 | failed | 5c75633aba2580002d3902e6 | Localizer_1_i00002.nii.gz | 512 | 512 | 3 | -1 | 0.0086 | 0.004 | Localizer | False | False | Localizer | _fl2d1 | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.2018041814140178131880096.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-15 20:45:24.774000+00:00 | 63361 | failed | 5c75633aba2580002d3902e6 | Localizer_1_i00001.nii.gz | 512 | 512 | 3 | -1 | 0.0086 | 0.004 | Localizer | False | False | Localizer | _fl2d1 | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.2018041814140178131880096.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-15 20:45:24.774000+00:00 | 63361 | failed | 5c756339ba25800038398297 | restingBOLD_mb6_1200_10.nii.gz | 448 | 448 | 1200 | -1 | 0.5 | 0.025 | restingBOLD_mb6_1200 | False | False | restingBOLD_mb6_1200 | epfid2d1_64 | ('ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC') | 1.3.12.2.1107.5.2.43.66044.201804181426368296184317.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-15 20:45:24.774000+00:00 | 63361 | failed | 5c756339ba25800038398298 | bbl1_restbold1_124mb_11.nii.gz | 448 | 448 | 124 | -1 | 3 | 0.032 | bbl1_restbold1_124mb | False | False | bbl1_restbold1_124mb | epfid2d1_64 | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC') | 1.3.12.2.1107.5.2.43.66044.2018041814370267454559619.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-15 20:45:24.774000+00:00 | 63361 | failed | 5c756339ba2580003939a503 | ASL_3DSPIRAL_V20_GE_12_Eq_1.nii.gz | 64 | 64 | 64 | -1 | 0.022 | 0.01003 | False | False | () | ||||
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-15 20:45:24.774000+00:00 | 63361 | failed | 5c756339ba2580003939a503 | ASL_3DSPIRAL_V20_GE_12.nii.gz | 64 | 64 | 64 | -1 | 4.6255 | 0.01003 | ASL_3DSPIRAL_V20_GE | False | False | ASL_3DSPIRAL_V20_GE_M0 | Sp3d1 | ('ORIGINAL', 'PRIMARY', 'M', 'ND') | 1.3.12.2.1107.5.2.43.66044.2018041814445154289476985.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-15 20:45:24.774000+00:00 | 63361 | failed | 5c756339ba25800038398296 | ASL_3DSPIRAL_V20_GE_13.nii.gz | 64 | 64 | 2560 | -1 | 4.6255 | 0.01003 | ASL_3DSPIRAL_V20_GE | False | False | ASL_3DSPIRAL_V20_GE_ASL | Sp3d1 | ('ORIGINAL', 'PRIMARY', 'M', 'ND') | 1.3.12.2.1107.5.2.43.66044.2018041814445430648677051.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-15 20:45:24.774000+00:00 | 63361 | failed | 5c756339ba2580002e38dd54 | ASL_3DSPIRAL_V20_GE_14.nii.gz | 64 | 64 | 32 | -1 | 4.6255 | 0.01003 | ASL_3DSPIRAL_V20_GE | False | False | ASL_3DSPIRAL_V20_GE_MeanPerf | Sp3d1 | ('ORIGINAL', 'PRIMARY', 'M', 'ND') | 1.3.12.2.1107.5.2.43.66044.2018041814445154291576986.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-15 20:45:24.774000+00:00 | 63361 | failed | 5c756339ba2580002c38d5df | DTI_MultiShell_117dir_15.nii.gz | 1400 | 1400 | 118 | -1 | 3.027 | 0.0828 | DTI_MultiShell_117dir | False | False | DTI_MultiShell_117dir | ep_b5#1 | ('ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'NORM', 'MOSAIC') | 1.3.12.2.1107.5.2.43.66044.2018041814510448864779646.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-15 20:45:24.774000+00:00 | 63361 | failed | 5c756339ba2580002c38d5df | DTI_MultiShell_117dir_15.bvec | 1400 | 1400 | 118 | -1 | 3.027 | 0.0828 | DTI_MultiShell_117dir | False | False | DTI_MultiShell_117dir | ep_b5#1 | ('ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'NORM', 'MOSAIC') | 1.3.12.2.1107.5.2.43.66044.2018041814510448864779646.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-15 20:45:24.774000+00:00 | 63361 | failed | 5c756339ba2580002c38d5df | DTI_MultiShell_117dir_15.bval | 1400 | 1400 | 118 | -1 | 3.027 | 0.0828 | DTI_MultiShell_117dir | False | False | DTI_MultiShell_117dir | ep_b5#1 | ('ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'NORM', 'MOSAIC') | 1.3.12.2.1107.5.2.43.66044.2018041814510448864779646.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-15 20:45:24.774000+00:00 | 63361 | failed | 5c756339ba25800038398294 | DTI_MultiShell_topup_ref_17.nii.gz | 140 | 140 | 92 | -1 | 3.027 | 0.0828 | DTI_MultiShell_topup_ref | False | False | DTI_MultiShell_topup_ref | ep_b5#1 | ('ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.2018041814573463580034910.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-15 20:45:24.774000+00:00 | 63361 | failed | 5c756339ba25800038398299 | MPRAGE_TI1100_ipat2_2.nii.gz | 256 | 192 | 160 | -1 | 1.81 | 0.00345 | MPRAGE_TI1100_ipat2 | False | False | MPRAGE_TI1100_ipat2 | _tfl3d1_16 | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.2018041814150078639280942.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-15 20:45:24.774000+00:00 | 63361 | failed | 5c756339ba2580003939a505 | T2_sagittal_SPACE_3.nii.gz | 256 | 256 | 176 | -1 | 3.2 | 0.408 | T2_sagittal_SPACE | False | False | T2_sagittal_SPACE | _spc_282ns | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.2018041814225838675681811.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-15 20:45:24.774000+00:00 | 63361 | failed | 5c75633aba2580002e38dd55 | TOF_3D_multi-slab_R2_4.nii.gz | 384 | 288 | 74 | -1 | 0.022 | 0.00366 | TOF_3D_multi-slab_R2 | False | False | TOF_3D_multi-slab_R2 | _fl3d1r_t70 | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.2018041814230724412383000.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-15 20:45:24.774000+00:00 | 63361 | failed | 5c756339ba2580003839829a | TOF_3D_multi-slab_R2_5.nii.gz | 142 | 384 | 1 | -1 | 0.022 | 0.00366 | TOF_3D_multi-slab_R2 | False | False | TOF_3D_multi-slab_R2_MIP_SAG | _fl3d1r_t70 | ('ORIGINAL', 'PRIMARY', 'MIP', 'SAG', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.2018041814244435763483338.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-15 20:45:24.774000+00:00 | 63361 | failed | 5c75633aba2580003839829b | TOF_3D_multi-slab_R2_6.nii.gz | 142 | 288 | 1 | -1 | 0.022 | 0.00366 | TOF_3D_multi-slab_R2 | False | False | TOF_3D_multi-slab_R2_MIP_COR | _fl3d1r_t70 | ('ORIGINAL', 'PRIMARY', 'MIP', 'COR', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.2018041814244435762983336.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-15 20:45:24.774000+00:00 | 63361 | failed | 5c75633aba2580002a38c710 | TOF_3D_multi-slab_R2_7.nii.gz | 384 | 288 | 1 | -1 | 0.022 | 0.00366 | TOF_3D_multi-slab_R2 | False | False | TOF_3D_multi-slab_R2_MIP_TRA | _fl3d1r_t70 | ('ORIGINAL', 'PRIMARY', 'MIP', 'TRA', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.2018041814244435762083334.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-15 20:45:24.774000+00:00 | 63361 | failed | 5c756339ba2580003939a504 | B0map_8_e2.nii.gz | 80 | 80 | 120 | -1 | 0.58 | 0.00658 | B0map | False | False | B0map | _fm2d2r | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.2018041814245128954183710.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-15 20:45:24.774000+00:00 | 63361 | failed | 5c756339ba2580003939a504 | B0map_8_e1.nii.gz | 80 | 80 | 120 | -1 | 0.58 | 0.00412 | B0map | False | False | B0map | _fm2d2r | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.2018041814245128954183710.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-15 20:45:24.774000+00:00 | 63361 | failed | 5c756339ba2580002c38d5e0 | B0map_9_ph.nii.gz | 80 | 80 | 60 | -1 | 0.58 | 0.00658 | B0map | False | False | B0map | _fm2d2r | ('ORIGINAL', 'PRIMARY', 'P', 'ND') | 1.3.12.2.1107.5.2.43.66044.2018041814245128955483711.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-16 16:27:02.664000+00:00 | 15829 | failed | 5c75633aba2580002d3902e6 | Localizer_1_i00003.nii.gz | 512 | 512 | 3 | -1 | 0.0086 | 0.004 | Localizer | False | False | Localizer | _fl2d1 | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.2018041814140178131880096.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-16 16:27:02.664000+00:00 | 15829 | failed | 5c75633aba2580002d3902e6 | Localizer_1_i00002.nii.gz | 512 | 512 | 3 | -1 | 0.0086 | 0.004 | Localizer | False | False | Localizer | _fl2d1 | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.2018041814140178131880096.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-16 16:27:02.664000+00:00 | 15829 | failed | 5c75633aba2580002d3902e6 | Localizer_1_i00001.nii.gz | 512 | 512 | 3 | -1 | 0.0086 | 0.004 | Localizer | False | False | Localizer | _fl2d1 | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.2018041814140178131880096.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-16 16:27:02.664000+00:00 | 15829 | failed | 5c756339ba25800038398297 | restingBOLD_mb6_1200_10.nii.gz | 448 | 448 | 1200 | -1 | 0.5 | 0.025 | restingBOLD_mb6_1200 | False | False | restingBOLD_mb6_1200 | epfid2d1_64 | ('ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC') | 1.3.12.2.1107.5.2.43.66044.201804181426368296184317.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-16 16:27:02.664000+00:00 | 15829 | failed | 5c756339ba25800038398298 | bbl1_restbold1_124mb_11.nii.gz | 448 | 448 | 124 | -1 | 3 | 0.032 | bbl1_restbold1_124mb | False | False | bbl1_restbold1_124mb | epfid2d1_64 | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC') | 1.3.12.2.1107.5.2.43.66044.2018041814370267454559619.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-16 16:27:02.664000+00:00 | 15829 | failed | 5c756339ba2580003939a503 | ASL_3DSPIRAL_V20_GE_12_Eq_1.nii.gz | 64 | 64 | 64 | -1 | 0.022 | 0.01003 | False | False | () | ||||
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-16 16:27:02.664000+00:00 | 15829 | failed | 5c756339ba2580003939a503 | ASL_3DSPIRAL_V20_GE_12.nii.gz | 64 | 64 | 64 | -1 | 4.6255 | 0.01003 | ASL_3DSPIRAL_V20_GE | False | False | ASL_3DSPIRAL_V20_GE_M0 | Sp3d1 | ('ORIGINAL', 'PRIMARY', 'M', 'ND') | 1.3.12.2.1107.5.2.43.66044.2018041814445154289476985.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-16 16:27:02.664000+00:00 | 15829 | failed | 5c756339ba25800038398296 | ASL_3DSPIRAL_V20_GE_13.nii.gz | 64 | 64 | 2560 | -1 | 4.6255 | 0.01003 | ASL_3DSPIRAL_V20_GE | False | False | ASL_3DSPIRAL_V20_GE_ASL | Sp3d1 | ('ORIGINAL', 'PRIMARY', 'M', 'ND') | 1.3.12.2.1107.5.2.43.66044.2018041814445430648677051.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-16 16:27:02.664000+00:00 | 15829 | failed | 5c756339ba2580002e38dd54 | ASL_3DSPIRAL_V20_GE_14.nii.gz | 64 | 64 | 32 | -1 | 4.6255 | 0.01003 | ASL_3DSPIRAL_V20_GE | False | False | ASL_3DSPIRAL_V20_GE_MeanPerf | Sp3d1 | ('ORIGINAL', 'PRIMARY', 'M', 'ND') | 1.3.12.2.1107.5.2.43.66044.2018041814445154291576986.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-16 16:27:02.664000+00:00 | 15829 | failed | 5c756339ba2580002c38d5df | DTI_MultiShell_117dir_15.nii.gz | 1400 | 1400 | 118 | -1 | 3.027 | 0.0828 | DTI_MultiShell_117dir | False | False | DTI_MultiShell_117dir | ep_b5#1 | ('ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'NORM', 'MOSAIC') | 1.3.12.2.1107.5.2.43.66044.2018041814510448864779646.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-16 16:27:02.664000+00:00 | 15829 | failed | 5c756339ba2580002c38d5df | DTI_MultiShell_117dir_15.bvec | 1400 | 1400 | 118 | -1 | 3.027 | 0.0828 | DTI_MultiShell_117dir | False | False | DTI_MultiShell_117dir | ep_b5#1 | ('ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'NORM', 'MOSAIC') | 1.3.12.2.1107.5.2.43.66044.2018041814510448864779646.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-16 16:27:02.664000+00:00 | 15829 | failed | 5c756339ba2580002c38d5df | DTI_MultiShell_117dir_15.bval | 1400 | 1400 | 118 | -1 | 3.027 | 0.0828 | DTI_MultiShell_117dir | False | False | DTI_MultiShell_117dir | ep_b5#1 | ('ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'NORM', 'MOSAIC') | 1.3.12.2.1107.5.2.43.66044.2018041814510448864779646.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-16 16:27:02.664000+00:00 | 15829 | failed | 5c756339ba25800038398294 | DTI_MultiShell_topup_ref_17.nii.gz | 140 | 140 | 92 | -1 | 3.027 | 0.0828 | DTI_MultiShell_topup_ref | False | False | DTI_MultiShell_topup_ref | ep_b5#1 | ('ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.2018041814573463580034910.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-16 16:27:02.664000+00:00 | 15829 | failed | 5c756339ba25800038398299 | MPRAGE_TI1100_ipat2_2.nii.gz | 256 | 192 | 160 | -1 | 1.81 | 0.00345 | MPRAGE_TI1100_ipat2 | False | False | MPRAGE_TI1100_ipat2 | _tfl3d1_16 | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.2018041814150078639280942.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-16 16:27:02.664000+00:00 | 15829 | failed | 5c756339ba2580003939a505 | T2_sagittal_SPACE_3.nii.gz | 256 | 256 | 176 | -1 | 3.2 | 0.408 | T2_sagittal_SPACE | False | False | T2_sagittal_SPACE | _spc_282ns | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.2018041814225838675681811.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-16 16:27:02.664000+00:00 | 15829 | failed | 5c75633aba2580002e38dd55 | TOF_3D_multi-slab_R2_4.nii.gz | 384 | 288 | 74 | -1 | 0.022 | 0.00366 | TOF_3D_multi-slab_R2 | False | False | TOF_3D_multi-slab_R2 | _fl3d1r_t70 | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.2018041814230724412383000.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-16 16:27:02.664000+00:00 | 15829 | failed | 5c756339ba2580003839829a | TOF_3D_multi-slab_R2_5.nii.gz | 142 | 384 | 1 | -1 | 0.022 | 0.00366 | TOF_3D_multi-slab_R2 | False | False | TOF_3D_multi-slab_R2_MIP_SAG | _fl3d1r_t70 | ('ORIGINAL', 'PRIMARY', 'MIP', 'SAG', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.2018041814244435763483338.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-16 16:27:02.664000+00:00 | 15829 | failed | 5c75633aba2580003839829b | TOF_3D_multi-slab_R2_6.nii.gz | 142 | 288 | 1 | -1 | 0.022 | 0.00366 | TOF_3D_multi-slab_R2 | False | False | TOF_3D_multi-slab_R2_MIP_COR | _fl3d1r_t70 | ('ORIGINAL', 'PRIMARY', 'MIP', 'COR', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.2018041814244435762983336.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-16 16:27:02.664000+00:00 | 15829 | failed | 5c75633aba2580002a38c710 | TOF_3D_multi-slab_R2_7.nii.gz | 384 | 288 | 1 | -1 | 0.022 | 0.00366 | TOF_3D_multi-slab_R2 | False | False | TOF_3D_multi-slab_R2_MIP_TRA | _fl3d1r_t70 | ('ORIGINAL', 'PRIMARY', 'MIP', 'TRA', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.2018041814244435762083334.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-16 16:27:02.664000+00:00 | 15829 | failed | 5c756339ba2580003939a504 | B0map_8_e2.nii.gz | 80 | 80 | 120 | -1 | 0.58 | 0.00658 | B0map | False | False | B0map | _fm2d2r | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.2018041814245128954183710.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-16 16:27:02.664000+00:00 | 15829 | failed | 5c756339ba2580003939a504 | B0map_8_e1.nii.gz | 80 | 80 | 120 | -1 | 0.58 | 0.00412 | B0map | False | False | B0map | _fm2d2r | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.2018041814245128954183710.0.0.0 |
104059 | 10762 | fmriprep125 | 0.1.2_1.2.5 | fmriprep_SDK_010762 | 2019-04-16 16:27:02.664000+00:00 | 15829 | failed | 5c756339ba2580002c38d5e0 | B0map_9_ph.nii.gz | 80 | 80 | 60 | -1 | 0.58 | 0.00658 | B0map | False | False | B0map | _fm2d2r | ('ORIGINAL', 'PRIMARY', 'P', 'ND') | 1.3.12.2.1107.5.2.43.66044.2018041814245128955483711.0.0.0 |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep125 04/05/2019 14:59:38 | 2019-04-05 19:00:04.294000+00:00 | 73752452 | complete | 5c93c0a6f546b6002abdfe43 | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300004569.nii.gz | 64 | 64 | 2560 | -1 | 4 | 0.01003 | ASL_3DSPIRAL_V20_GE | False | False | ASL_3DSPIRAL_V20_GE_ASL | Sp3d1 | ('ORIGINAL', 'PRIMARY', 'M', 'ND') | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300004569 |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep125 04/05/2019 14:59:38 | 2019-04-05 19:00:04.294000+00:00 | 73752452 | complete | 5c93be6df546b6002cbe1b65 | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300002008_Eq_1.nii.gz | 64 | 64 | 64 | -1 | False | False | () | ||||||
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep125 04/05/2019 14:59:38 | 2019-04-05 19:00:04.294000+00:00 | 73752452 | complete | 5c93be6df546b6002cbe1b65 | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300002008.nii.gz | 64 | 64 | 64 | -1 | 4 | 0.01003 | ASL_3DSPIRAL_V20_GE | False | False | ASL_3DSPIRAL_V20_GE_M0 | Sp3d1 | ('ORIGINAL', 'PRIMARY', 'M', 'ND') | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300002008 |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep125 04/05/2019 14:59:38 | 2019-04-05 19:00:04.294000+00:00 | 73752452 | complete | 5c93c0b0f546b6002fbf3a7e | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300004602.nii.gz | 64 | 64 | 32 | -1 | 4 | 0.01003 | ASL_3DSPIRAL_V20_GE | False | False | ASL_3DSPIRAL_V20_GE_MeanPerf | Sp3d1 | ('ORIGINAL', 'PRIMARY', 'M', 'ND') | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300004602 |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep125 04/05/2019 14:59:38 | 2019-04-05 19:00:04.294000+00:00 | 73752452 | complete | 5c93bcebf546b6002cbe1b61 | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300000556_e2.nii.gz | 80 | 80 | 120 | -1 | 0.58 | 0.00658 | B0map | False | False | B0map | _fm2d2r | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300000556 |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep125 04/05/2019 14:59:38 | 2019-04-05 19:00:04.294000+00:00 | 73752452 | complete | 5c93bcebf546b6002cbe1b61 | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300000556_e1.nii.gz | 80 | 80 | 120 | -1 | 0.58 | 0.00412 | B0map | False | False | B0map | _fm2d2r | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300000556 |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep125 04/05/2019 14:59:38 | 2019-04-05 19:00:04.294000+00:00 | 73752452 | complete | 5c93bcfbf546b6002cbe1b63 | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300000617_e2_ph.nii.gz | 80 | 80 | 60 | -1 | 0.58 | 0.00658 | B0map | False | False | B0map | _fm2d2r | ('ORIGINAL', 'PRIMARY', 'P', 'ND') | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300000617 |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep125 04/05/2019 14:59:38 | 2019-04-05 19:00:04.294000+00:00 | 73752452 | complete | 5c93c0f3f546b6002abdfe45 | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300004721.nii.gz | 1400 | 1400 | 118 | -1 | 3.027 | 0.0828 | DTI_MultiShell_117dir | False | False | DTI_MultiShell_117dir | ep_b5#1 | ('ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'NORM', 'MOSAIC') | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300004721 |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep125 04/05/2019 14:59:38 | 2019-04-05 19:00:04.294000+00:00 | 73752452 | complete | 5c93c0f3f546b6002abdfe45 | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300004721.bvec | 1400 | 1400 | 118 | -1 | 3.027 | 0.0828 | DTI_MultiShell_117dir | False | False | DTI_MultiShell_117dir | ep_b5#1 | ('ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'NORM', 'MOSAIC') | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300004721 |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep125 04/05/2019 14:59:38 | 2019-04-05 19:00:04.294000+00:00 | 73752452 | complete | 5c93c0f3f546b6002abdfe45 | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300004721.bval | 1400 | 1400 | 118 | -1 | 3.027 | 0.0828 | DTI_MultiShell_117dir | False | False | DTI_MultiShell_117dir | ep_b5#1 | ('ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'NORM', 'MOSAIC') | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300004721 |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep125 04/05/2019 14:59:38 | 2019-04-05 19:00:04.294000+00:00 | 73752452 | complete | 5c93c221f546b6002dbe38b3 | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300005919.nii.gz | 140 | 140 | 92 | -1 | 3.027 | 0.0828 | DTI_MultiShell_topup_ref | False | False | DTI_MultiShell_topup_ref | ep_b5#1 | ('ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'MB', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300005919 |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep125 04/05/2019 14:59:38 | 2019-04-05 19:00:04.294000+00:00 | 73752452 | complete | 5c93bc57f546b6002ebe99b0 | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300000016_i00003.nii.gz | 512 | 512 | 3 | -1 | 0.0086 | 0.004 | Localizer | False | False | Localizer | _fl2d1 | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300000016 |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep125 04/05/2019 14:59:38 | 2019-04-05 19:00:04.294000+00:00 | 73752452 | complete | 5c93bc57f546b6002ebe99b0 | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300000016_i00002.nii.gz | 512 | 512 | 3 | -1 | 0.0086 | 0.004 | Localizer | False | False | Localizer | _fl2d1 | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300000016 |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep125 04/05/2019 14:59:38 | 2019-04-05 19:00:04.294000+00:00 | 73752452 | complete | 5c93bc57f546b6002ebe99b0 | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300000016_i00001.nii.gz | 512 | 512 | 3 | -1 | 0.0086 | 0.004 | Localizer | False | False | Localizer | _fl2d1 | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300000016 |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep125 04/05/2019 14:59:38 | 2019-04-05 19:00:04.294000+00:00 | 73752452 | complete | 5c93bc82f546b6002abdfe33 | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300000177.nii.gz | 256 | 192 | 160 | -1 | 1.81 | 0.00345 | MPRAGE_TI1100_ipat2 | False | False | MPRAGE_TI1100_ipat2 | _tfl3d1_16 | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300000177 |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep125 04/05/2019 14:59:38 | 2019-04-05 19:00:04.294000+00:00 | 73752452 | complete | 5c93bcaef546b6002fbf3a3c | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300000354.nii.gz | 256 | 256 | 176 | -1 | 3.2 | 0.408 | T2_sagittal_SPACE | False | False | T2_sagittal_SPACE | _spc_282ns | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300000354 |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep125 04/05/2019 14:59:38 | 2019-04-05 19:00:04.294000+00:00 | 73752452 | complete | 5c93bcc3f546b6002fbf3a40 | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300000429.nii.gz | 384 | 288 | 74 | -1 | 0.022 | 0.00366 | TOF_3D_multi-slab_R2 | False | False | TOF_3D_multi-slab_R2 | _fl3d1r_t70 | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300000429 |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep125 04/05/2019 14:59:38 | 2019-04-05 19:00:04.294000+00:00 | 73752452 | complete | 5c93bcc9f546b6002fbf3a45 | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300000433.nii.gz | 142 | 288 | 1 | -1 | 0.022 | 0.00366 | TOF_3D_multi-slab_R2 | False | False | TOF_3D_multi-slab_R2_MIP_COR | _fl3d1r_t70 | ('ORIGINAL', 'PRIMARY', 'MIP', 'COR', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300000433 |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep125 04/05/2019 14:59:38 | 2019-04-05 19:00:04.294000+00:00 | 73752452 | complete | 5c93bcc6f546b6002abdfe35 | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300000431.nii.gz | 142 | 384 | 1 | -1 | 0.022 | 0.00366 | TOF_3D_multi-slab_R2 | False | False | TOF_3D_multi-slab_R2_MIP_SAG | _fl3d1r_t70 | ('ORIGINAL', 'PRIMARY', 'MIP', 'SAG', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300000431 |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep125 04/05/2019 14:59:38 | 2019-04-05 19:00:04.294000+00:00 | 73752452 | complete | 5c93bcccf546b6002fbf3a49 | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300000435.nii.gz | 384 | 288 | 1 | -1 | 0.022 | 0.00366 | TOF_3D_multi-slab_R2 | False | False | TOF_3D_multi-slab_R2_MIP_TRA | _fl3d1r_t70 | ('ORIGINAL', 'PRIMARY', 'MIP', 'TRA', 'ND', 'NORM') | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300000435 |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep125 04/05/2019 14:59:38 | 2019-04-05 19:00:04.294000+00:00 | 73752452 | complete | 5c93c261f546b6002abdfe49 | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300006151.nii.gz | 448 | 448 | 231 | -1 | 3 | 0.032 | bbl1_fracback1_231mb | False | False | bbl1_fracback1_231mb | epfid2d1_64 | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC') | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300006151 |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep125 04/05/2019 14:59:38 | 2019-04-05 19:00:04.294000+00:00 | 73752452 | complete | 5c93be5cf546b6002fbf3a50 | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300001943.nii.gz | 448 | 448 | 124 | -1 | 3 | 0.032 | bbl1_restbold1_124mb | False | False | bbl1_restbold1_124mb | epfid2d1_64 | ('ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'MOSAIC') | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300001943 |
86486 | 11196 | fmriprep125 | 0.1.2_1.2.5 | fmriprep125 04/05/2019 14:59:38 | 2019-04-05 19:00:04.294000+00:00 | 73752452 | complete | 5c93be3af546b6002ebe99ba | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300001818.nii.gz | 448 | 448 | 1200 | -1 | 0.5 | 0.025 | restingBOLD_mb6_1200 | False | False | restingBOLD_mb6_1200 | epfid2d1_64 | ('ORIGINAL', 'PRIMARY', 'M', 'MB', 'ND', 'NORM', 'MOSAIC') | 1.3.12.2.1107.5.2.43.66044.30000019032116274975300001818 |
i.e. for every run, there is a full set of sequences, gathered/pivoted vertically. This long table now gives you the added option of filtering by sequence specific preconditions, e.g. any subject with a T1w image should have an fMRIPrep run:
# Tidy R syntax:
df %>%
filter(str_detect(tolower(gearName), 'fmriprep')) %>%
filter(str_detect(runStatus, 'complete')) %>%
filter(str_detect(tolower(protocolName), 't1w'))
Conclusion
fw-gear-audit
allows users to get a tabular, indexable, searchable overview of the progress of gears run on Flywheel.
Please submit any bug reports, feature requests, or questions to the issues page.
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