Skip to main content

"Translation of the GA4GH VRS and VRSATILE Schemas to a Pydantic data model"

Project description


Translation of the GA4GH VRS v1.2.0 and VRSATILE schemas to a Pydantic data model

Developer instructions

To install vrstaile-pydantic:

pip install ga4gh.vrsatile.pydantic

Following are sections include instructions specifically for developers.

For a development install, we recommend using Pipenv. See the pipenv docs for direction on installing pipenv in your compute environment.

Once installed, from the project root dir, just run:

pipenv lock
pipenv sync

Init coding style tests

Code style is managed by flake8 and checked prior to commit.

We use pre-commit to run conformance tests.

This ensures:

  • Check code style
  • Check for added large files
  • Detect AWS Credentials
  • Detect Private Key

Before first commit run:

pre-commit install

Running unit tests

Running unit tests is as easy as pytest.

pipenv run pytest

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for ga4gh.vrsatile.pydantic, version 0.0.5
Filename, size File type Python version Upload date Hashes
Filename, size ga4gh.vrsatile.pydantic-0.0.5-py3-none-any.whl (9.0 kB) File type Wheel Python version py3 Upload date Hashes View
Filename, size ga4gh.vrsatile.pydantic-0.0.5.tar.gz (9.1 kB) File type Source Python version None Upload date Hashes View

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Huawei Huawei PSF Sponsor Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page