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"Translation of the GA4GH VRS and VRSATILE Schemas to a Pydantic data model"

Project description

vrsatile-pydantic

Translation of the GA4GH VRS v1.2.0 and VRSATILE schemas to a Pydantic data model

Developer instructions

To install vrstaile-pydantic:

pip install ga4gh.vrsatile.pydantic

Following are sections include instructions specifically for developers.

For a development install, we recommend using Pipenv. See the pipenv docs for direction on installing pipenv in your compute environment.

Once installed, from the project root dir, just run:

pipenv lock
pipenv sync

Init coding style tests

Code style is managed by flake8 and checked prior to commit.

We use pre-commit to run conformance tests.

This ensures:

  • Check code style
  • Check for added large files
  • Detect AWS Credentials
  • Detect Private Key

Before first commit run:

pre-commit install

Running unit tests

Running unit tests is as easy as pytest.

pipenv run pytest

Project details


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Files for ga4gh.vrsatile.pydantic, version 0.0.5
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Filename, size ga4gh.vrsatile.pydantic-0.0.5-py3-none-any.whl (9.0 kB) File type Wheel Python version py3 Upload date Hashes View
Filename, size ga4gh.vrsatile.pydantic-0.0.5.tar.gz (9.1 kB) File type Source Python version None Upload date Hashes View

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