ga4gh.vrsatile.pydantic 0.1.dev0

"Translation of the GA4GH VRS and VRSATILE Schemas to a Pydantic data model"

vrsatile-pydantic

Translation of the GA4GH VRS v1.2.0 and VRSATILE schemas to a Pydantic data model

Developer instructions

To install vrstaile-pydantic:

pip install ga4gh.vrsatile.pydantic

Following are sections include instructions specifically for developers.

For a development install, we recommend using Pipenv. See the pipenv docs for direction on installing pipenv in your compute environment.

Once installed, from the project root dir, just run:

pipenv lock
pipenv sync

Init coding style tests

Code style is managed by flake8 and checked prior to commit.

We use pre-commit to run conformance tests.

This ensures:

• Check code style
• Check for added large files
• Detect AWS Credentials
• Detect Private Key

Before first commit run:

pre-commit install

Running unit tests

Running unit tests is as easy as pytest.

pipenv run pytest