galaxy-app

Overview

The Galaxy application logic (backend).

Code: https://github.com/galaxyproject/galaxy

History

23.0.6 (2023-10-23)

Bug fixes

Fix upload paramfile handling (for real user setups) by @bernt-matthias in #16504
Fix extra files path handling by @mvdbeek in #16541
Make sure job_wrapper uses a consistent metadata strategy by @mvdbeek in #16569
Fix conditional step evaluation with datasets in repeats by @mvdbeek in #16584
Don’t read request body into memory by @mvdbeek in #16585
Fixes for extra files handling and cached object stores by @mvdbeek in #16595
Lazy load tool data tables in celery worker by @mvdbeek in #16640
Force __DUPLICATE_FILE_TO_COLLECTION__ ‘size’ param to integer by @simonbray in #16659

Enhancements

Update pulsar client library to 0.15.5 by @mvdbeek in #16701

23.0.5 (2023-07-29)

Bug fixes

Skip installing npm/yarn if available, fix conditional dependency parsing, create virtualenv via conda when conda active by @bernt-matthias in #16403
Fix test discovery in vscode by @mvdbeek in #16413
Fixes for (gitlab) error reporting by @bernt-matthias in #16424

23.0.4 (2023-06-30)

Bug fixes

Fix default when statement evaluation by @mvdbeek in #16332
Redact private role name and description when purging user by @mvdbeek in #16349

23.0.3 (2023-06-26)

Bug fixes

Bump galaxy-release-util version to 0.1.2 by @mvdbeek in #16241

Enhancements

When importing tool data bundles, use the first loc file for the matching table by @natefoo in #16247

Other changes

Forward port of slugify username received from oidc by @nuwang in #16271

23.0.2 (2023-06-13)

Bug fixes

Fix Text File Busy errors at the source by @mvdbeek in #16212

Enhancements

Point release deps fixes and docs by @mvdbeek in #16214
Use galaxy-release-util to upload python packages by @mvdbeek in #16240

23.0.1 (2023-06-08)

Bug fixes

Display DCE in job parameter component, allow rerunning with DCE input by @mvdbeek in #15744
Fix mixed outputs_to_working_directory pulsar destinations by @mvdbeek in #15927
Update Gravity to 1.0.3 by @natefoo in #15939
Various fixes to path prefix handling by @mvdbeek in #16033
Fix case sensitive filtering by name in histories by @davelopez in #16036
Fix gcsfs test discovery by @mvdbeek in #16039
Replace httpbin service with pytest-httpserver by @mvdbeek in #16042
Update pulsar to 0.15.2 by @mvdbeek in #16050
Anonymous User tool link bug fix by @ahmedhamidawan in #16065
Fix BCO export by updating gxformat2 by @mvdbeek in #16081
Fix job failure handling when condor indicates job failure by @mvdbeek in #16096
Fix dataype_change not updating HDCA update_time by @mvdbeek in #16099
Extract HDA for code_file validate_input hook by @mvdbeek in #16120
Fix sort error when re-running job with DCE collection input by @mvdbeek in #16126
Fix related-hid in bulk contents API by @mvdbeek in #16128
Fix rank calculation for jobs waiting to be run by anonymous users by @jdavcs in #16137
Tool warnings can either be None or a Dictionary but not a String by @guerler in #16183
Pin minimum tpv version by @mvdbeek in #16201

Other changes

Startup fix when tool removed between reboot by @mvdbeek in #16175

20.9.0 (2020-10-15)

First release from the 20.09 branch of Galaxy.

20.5.0 (2020-07-04)

First release from the 20.05 branch of Galaxy.

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