Skip to main content

Galaxy datatype framework and datatypes

Project description


The Galaxy models, datatype framework, and datatype implementations.


24.1.1 (2024-07-02)

Bug fixes


Other changes

24.0.3 (2024-06-28)

Bug fixes

  • Downgrade count lines error to warning by @mvdbeek in #18175

  • Don’t set dataset peek for errored jobs by @mvdbeek in #18231

  • Transparently open compressed files in DatasetDataProvider by @mvdbeek in #18248

  • Raise exception when extracting dataset from collection without datasets by @mvdbeek in #18249

  • Set page importable to false when serializing by @mvdbeek in #18263

  • Fix first_dataset_element type hint by @mvdbeek in #18284

  • Do not copy purged outputs to object store by @mvdbeek in #18342

  • Fix user’s private role can be missing by @davelopez in #18381

  • Assign default data extension on discovered collection output by @mvdbeek in #18389

Other changes

  • Replace busybox:ubuntu-14.04 image with busybox:1.36.1-glibc by @mvdbeek in #18428

24.0.2 (2024-05-07)

No recorded changes since last release

24.0.1 (2024-05-02)

Bug fixes

  • Always serialize element_count and populated when listing contents by @mvdbeek in #17890

  • Fix deadlock that can occur when changing job state by @mvdbeek in #17896

  • Fix tool form building if select filters from unavailable dataset metadata by @mvdbeek in #17930

  • Fix InvalidRequestError: Can't operate on closed transaction inside context manager. Please complete the context manager before emitting further commands. by @mvdbeek in #17932

  • Never fail dataset serialization if display_peek fails by @mvdbeek in #17937

  • Fix output datatype when uncompressing a dataset with incorrect datatype by @nsoranzo in #17944

  • Use or copy StoredWorkflow when copying step by @mvdbeek in #17988

  • Raise MessageException when report references invalid workflow output by @mvdbeek in #18009

  • Fix tag regex pattern by @jdavcs in #18025

  • Fix History Dataset Association creation so that hid is always set by @mvdbeek in #18036

  • Fix history export with missing dataset hids by @davelopez in #18052

  • Fix comments lost on import by @ElectronicBlueberry in #18060

  • Fix history update time after bulk operation by @davelopez in #18068

24.0.0 (2024-04-02)

Bug fixes


23.2.1 (2024-02-21)

Bug fixes


Other changes

23.1.4 (2024-01-04)

Bug fixes

Other changes

23.1.3 (2023-12-01)

Bug fixes

  • Add missing optional description field, fixes ephemeris data library example by @mvdbeek in #17116

23.1.2 (2023-11-29)

Bug fixes

  • Skip change_datatype things if we’re not actually changing the extension by @mvdbeek in #16931

  • Fix copying metadata to copied job outputs by @mvdbeek in #17007

  • Update tar_to_directory dependency by @mvdbeek in #17009

  • Assert that DatasetCollectioElement has an associated object by @mvdbeek in #17071

  • Fix input dates in notifications: consider timezone offset by @davelopez in #17088

  • Allow relative URLs in broadcasts action links by @davelopez in #17093


23.1.1 (2023-10-23)

Bug fixes


Other changes

23.0.6 (2023-10-23)

Bug fixes

  • Fix extra files path handling by @mvdbeek in #16541

  • Don’t fail invocation message without dependent_workflow_step_id by @mvdbeek in #16628

23.0.5 (2023-07-29)

Bug fixes

  • Copy when_expression when copying workflow step by @mvdbeek in #16377

23.0.4 (2023-06-30)

No recorded changes since last release

23.0.3 (2023-06-26)

No recorded changes since last release

23.0.2 (2023-06-13)

No recorded changes since last release

23.0.1 (2023-06-08)

Bug fixes

  • Display DCE in job parameter component, allow rerunning with DCE input by @mvdbeek in #15744

  • Fix folder listing via file browser by @mvdbeek in #15950

  • Fix RO-crate invocation export with complex collections by @davelopez in #15971

  • Backport Improve display chunk generation for BAMs by @mvdbeek in #16007

  • Ensure history export contains all expected datasets by @davelopez in #16013

  • Various fixes to path prefix handling by @mvdbeek in #16033

  • Fix dataype_change not updating HDCA update_time by @mvdbeek in #16099

  • Fix mypy error due to alembic 1.11.0 by @nsoranzo in #16104

  • Fix extended metadata file size handling by @mvdbeek in #16109

  • Fix implicit converters with optional parameters by @mvdbeek in #16133

  • Make ctx_rev optional in InstalledToolShedRepository response model by @dannon in #16139

  • Fix optional fields being validated as missing in ts api by @jmchilton in #16141

  • Support ro crate 0.8.0 and 0.7.0 by @mvdbeek in #16193

  • Verify existence of default value attribute for user forms fields by @guerler in #16205

20.9.0 (2020-10-15)

  • First release from the 20.09 branch of Galaxy.

20.5.0 (2020-07-04)

  • First release from the 20.05 branch of Galaxy.

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

galaxy_data-24.1.1.tar.gz (557.2 kB view hashes)

Uploaded Source

Built Distribution

galaxy_data-24.1.1-py3-none-any.whl (682.3 kB view hashes)

Uploaded Python 3

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page