galaxy-job-execution 23.2.1

Galaxy job execution runtime utilities

Overview

The Galaxy job execution runtime module.

• Code: https://github.com/galaxyproject/galaxy

History

23.2.1 (2024-02-21)

Enhancements

• Replace file_name property with get_file_name function by @SergeyYakubov in #16783

• Enable some flake8-logging-format rules in ruff by @nsoranzo in #16915

• Move and re-use persist_extra_files by @mvdbeek in #16955

• optimize object store cache operations by @SergeyYakubov in #17025

23.1.4 (2024-01-04)

No recorded changes since last release

23.1.3 (2023-12-01)

No recorded changes since last release

23.1.2 (2023-11-29)

Bug fixes

• Fix library import from path linking files by @davelopez in #16919

• Don’t store job in JobIO instance attributes by @mvdbeek in #16965

• Fix extra files collection if using store_by="id" and outputs_to_working_directory by @mvdbeek in #17067

23.1.1 (2023-10-23)

Bug fixes

• Fix tags ownership by @davelopez in #16339

• Push to object store even if set_meta fails by @mvdbeek in #16667

• Fix metadata setting in extended metadata + outputs_to_working_directory mode by @mvdbeek in #16678

• Fix ItemOwnerShipException in tag removal by @mvdbeek in #16773

• Fix and prevent persisting null file_size by @mvdbeek in #16855

Enhancements

• Empower Users to Select Storage Destination by @jmchilton in #14073

• Towards SQLAlchemy 2.0: drop session autocommit setting by @jdavcs in #15421

• Unify url handling with filesources by @nuwang in #15497

• Handle “email_from” config option consistently, as per schema description by @jdavcs in #15557

• Record input datasets and collections at full parameter path by @mvdbeek in #15978

• Code cleanups from ruff and pyupgrade by @nsoranzo in #16035

• Improved Cache Monitoring for Object Stores by @jmchilton in #16110

• Remove various fallback behaviors by @mvdbeek in #16199

23.0.6 (2023-10-23)

Bug fixes

• Fix extra files path handling by @mvdbeek in #16541

• Make sure job_wrapper uses a consistent metadata strategy by @mvdbeek in #16569

• Fixes for extra files handling and cached object stores by @mvdbeek in #16595

23.0.5 (2023-07-29)

No recorded changes since last release

23.0.4 (2023-06-30)

No recorded changes since last release

23.0.3 (2023-06-26)

No recorded changes since last release

23.0.2 (2023-06-13)

No recorded changes since last release

23.0.1 (2023-06-08)

No recorded changes since last release

20.9.0 (2020-10-15)

• First release from the 20.09 branch of Galaxy.

20.5.0 (2020-07-04)

• First release from the 20.05 branch of Galaxy.