gdecomp: python binding of C++ signal gaussian decomposition.
This package aims at decomposing a signal (1D numpy array) into a sum of gaussian, typically used in full waveform lidar analysis. It is used in particular to process lidar simulations produced with pytools4dart. This code is inspired from C++ code developped by DART team (Jianbo Qi, Tiangang Yin), for DART radiative transfer simulator.
- Creation date: 2019-05-24
- Author: Florian de Boissieu
Install
Package gdecomp can be installed with:
pip install gdecomp
Example
import gdecomp
import numpy as np
import matplotlib.pyplot as plt
x=np.arange(100)
gaus=np.array([[130, 20, 5],
[50, 50, 10],
[10, 70, 5]])
y=np.zeros(x.shape)
for i in range(gaus.shape[0]):
y += gaus[i,0] / (np.sqrt(2 * np.pi)*gaus[i,2]) * np.exp(-(x - gaus[i,1])**2 / (2 * gaus[i,2]**2))
out = gdecomp.GaussianDecomposition(y)
out = np.reshape(out, (-1, 3))
fit = np.zeros(y.size)
for i in range(out.shape[0]):
fit += out[i,0] / (np.sqrt(2 * np.pi)*out[i,2]) * np.exp(-(x - out[i,1])**2 / (2 * out[i,2]**2))
line1 = plt.plot(x, y, color='k', label='waveform')
line2 = plt.plot(x, fit, color='r', linestyle='--', label='fit')
plt.legend(loc='upper right')
Aknowledgements
This package includes cmpfit source code of CMPFIT library, software developed by the University of Chicago, as Operator of Argonne Nationa Laboratory. See src/mpfit/DISCLAIMER for copyright details of that code.
1 maintainer
Metadata
1 maintainer
Release files for gdecomp 1.0.6
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| gdecomp-1.0.6.tar.gz | 28.6 kB | Details |
Built distributions (wheels)
| File | Reset | |||
|---|---|---|---|---|
| gdecomp-1.0.6-cp38-cp38-win_amd64.whl | CPython 3.8 | CPython 3.8 | Windows x86-64 | Details |
| gdecomp-1.0.6-cp38-cp38-win32.whl | CPython 3.8 | CPython 3.8 | Windows x86-32 | Details |
| gdecomp-1.0.6-cp38-cp38-manylinux2010_x86_64.whl | CPython 3.8 | CPython 3.8 | Linux glibc 2.12+ x86-64 | Details |
| gdecomp-1.0.6-cp38-cp38-manylinux2010_i686.whl | CPython 3.8 | CPython 3.8 | Linux glibc 2.12+ x86-32 | Details |
| gdecomp-1.0.6-cp38-cp38-macosx_10_9_x86_64.whl | CPython 3.8 | CPython 3.8 | macOS 10.9+ x86-64 | Details |
| gdecomp-1.0.6-cp37-cp37m-win_amd64.whl | CPython 3.7 | CPython 3.7 pymalloc | Windows x86-64 | Details |
| gdecomp-1.0.6-cp37-cp37m-win32.whl | CPython 3.7 | CPython 3.7 pymalloc | Windows x86-32 | Details |
| gdecomp-1.0.6-cp37-cp37m-manylinux2010_x86_64.whl | CPython 3.7 | CPython 3.7 pymalloc | Linux glibc 2.12+ x86-64 | Details |
| gdecomp-1.0.6-cp37-cp37m-manylinux2010_i686.whl | CPython 3.7 | CPython 3.7 pymalloc | Linux glibc 2.12+ x86-32 | Details |
| gdecomp-1.0.6-cp37-cp37m-macosx_10_9_x86_64.whl | CPython 3.7 | CPython 3.7 pymalloc | macOS 10.9+ x86-64 | Details |
| gdecomp-1.0.6-cp36-cp36m-win_amd64.whl | CPython 3.6 | CPython 3.6 pymalloc | Windows x86-64 | Details |
| gdecomp-1.0.6-cp36-cp36m-win32.whl | CPython 3.6 | CPython 3.6 pymalloc | Windows x86-32 | Details |
| gdecomp-1.0.6-cp36-cp36m-manylinux2010_x86_64.whl | CPython 3.6 | CPython 3.6 pymalloc | Linux glibc 2.12+ x86-64 | Details |
| gdecomp-1.0.6-cp36-cp36m-manylinux2010_i686.whl | CPython 3.6 | CPython 3.6 pymalloc | Linux glibc 2.12+ x86-32 | Details |
| gdecomp-1.0.6-cp36-cp36m-macosx_10_9_x86_64.whl | CPython 3.6 | CPython 3.6 pymalloc | macOS 10.9+ x86-64 | Details |
| gdecomp-1.0.6-cp35-cp35m-win_amd64.whl | CPython 3.5 | CPython 3.5 pymalloc | Windows x86-64 | Details |
| gdecomp-1.0.6-cp35-cp35m-win32.whl | CPython 3.5 | CPython 3.5 pymalloc | Windows x86-32 | Details |
| gdecomp-1.0.6-cp35-cp35m-manylinux2010_x86_64.whl | CPython 3.5 | CPython 3.5 pymalloc | Linux glibc 2.12+ x86-64 | Details |
| gdecomp-1.0.6-cp35-cp35m-manylinux2010_i686.whl | CPython 3.5 | CPython 3.5 pymalloc | Linux glibc 2.12+ x86-32 | Details |
| gdecomp-1.0.6-cp35-cp35m-macosx_10_9_x86_64.whl | CPython 3.5 | CPython 3.5 pymalloc | macOS 10.9+ x86-64 | Details |
Total release size: 2.6 MB
Release files / gdecomp-1.0.6.tar.gz
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Release files / gdecomp-1.0.6-cp38-cp38-win32.whl
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Release files / gdecomp-1.0.6-cp36-cp36m-win_amd64.whl
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twine/3.1.1 pkginfo/1.5.0.1 requests/2.23.0 setuptools/46.1.3 requests-toolbelt/0.9.1 tqdm/4.46.0 CPython/3.8.2
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Release files / gdecomp-1.0.6-cp35-cp35m-manylinux2010_i686.whl
| Download URL | gdecomp-1.0.6-cp35-cp35m-manylinux2010_i686.whl |
|---|---|
| Size | 202.2 kB |
| Tags | CPython 3.5 CPython 3.5 pymalloc Linux glibc 2.12+ x86-32 |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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twine/3.1.1 pkginfo/1.5.0.1 requests/2.23.0 setuptools/46.1.3 requests-toolbelt/0.9.1 tqdm/4.46.0 CPython/3.8.2
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Release files / gdecomp-1.0.6-cp35-cp35m-macosx_10_9_x86_64.whl
| Download URL | gdecomp-1.0.6-cp35-cp35m-macosx_10_9_x86_64.whl |
|---|---|
| Size | 52.3 kB |
| Tags | CPython 3.5 CPython 3.5 pymalloc macOS 10.9+ x86-64 |
|
SHA-256 checksum How to use checksums |
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twine/3.1.1 pkginfo/1.5.0.1 requests/2.23.0 setuptools/46.1.3.post20200330 requests-toolbelt/0.9.1 tqdm/4.46.0 CPython/3.7.7
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