gencodegenes

Package to load genes from GENCODE GTF files

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Project description

GENCODEGenes

This code loads genes from GENCODE GTF files into, groups transcripts by gene, and provides methods for transcripts, so you can find CDS distances and sequences.

Install

pip install gencodegenes

Usage

from gencodegenes import Gencode

gencode = Gencode('PATH_TO_GTF')

# get gene by HGNC symbol
gene = gencode['OR5A1]
transcripts = gene.transcripts
canonical = gene.canonical

Project details

These details have not been verified by PyPI

Project links

Homepage

GitHub Statistics

View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

Release history Release notifications | RSS feed

1.1.2

Mar 27, 2024

1.1.1

Mar 26, 2024

1.1.0

Mar 26, 2024

1.0.10

Mar 21, 2024

1.0.9

Nov 7, 2023

1.0.8

Apr 7, 2023

1.0.7

Apr 7, 2023

1.0.6

Mar 14, 2023

1.0.5

Mar 14, 2023

1.0.4

Mar 14, 2023

1.0.2

Mar 13, 2023

This version

1.0.1

Mar 13, 2023

1.0.0

Mar 13, 2023

0.9.15

Mar 13, 2023

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