Package to load genes from GENCODE GTF files
Project description
GENCODEGenes
This code loads genes from GENCODE GTF files into, groups transcripts by gene, and provides methods for transcripts, so you can find CDS distances and sequences.
Install
pip install gencodegenes
Usage
from gencodegenes import Gencode
gencode = Gencode('PATH_TO_GTF')
# get gene by HGNC symbol
gene = gencode['OR5A1]
transcripts = gene.transcripts
canonical = gene.canonical
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