Package to load genes from GENCODE GTF files

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  • License: MIT License (MIT)
  • Author: Jeremy McRae
  • Requires: Python >=3.8
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Project description

GENCODEGenes

This code loads genes from GENCODE GTF files into, groups transcripts by gene, and provides methods for transcripts, so you can find CDS distances and sequences.

Install

pip install gencodegenes

Usage

from gencodegenes import Gencode

gencode = Gencode('PATH_TO_GTF')

# get gene by HGNC symbol
gene = gencode['OR5A1]
transcripts = gene.transcripts
canonical = gene.canonical

Project details

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  • License: MIT License (MIT)
  • Author: Jeremy McRae
  • Requires: Python >=3.8
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Release history Release notifications | RSS feed

1.1.6

1.1.5

1.1.4

1.1.2

1.1.1

1.1.0

1.0.10

1.0.9

1.0.8

1.0.7

This version

1.0.6

1.0.5

1.0.4

1.0.2

1.0.1

1.0.0

0.9.15

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