Gencove API and CLI tool
Project description
The Gencove CLI
What is Gencove?
Gencove is a high-throughput, cost-effective platform for genome sequencing and analysis, enabling a wide array of genomics applications across industries. Furthermore, it is the only enterprise analytics platform for low-pass whole genome sequencing (lpWGS).
The Gencove command-line interface (CLI) can be used to easily access the Gencove platform.
Main Features
It is most often used for:
- Uploading FASTQ files for analysis
- Downloading analysis results which include the following:
- Sequence (
.fastq.gz
) - Alignment (
.bam
,.bai
) - Imputation (
.vcf.gz
,.vcf.gz.tbi
,.vcf.gz.csi
)
- Sequence (
- Assigning metadata to Gencove samples
Before filing a bug report, please refer to the following link. Bugs should be reported here.
Installation
# install via PyPI
pip install gencove
# updating to latest version
pip install -U gencove
Documentation
Online documentation (with examples) is available at docs.gencove.com
API reference for publicly available endpoints: API Reference
Comprehensive CLI Documentation available: CLI Reference
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Hashes for gencove-2.4.5-py2.py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 8f434c8005d9dbd260d29de2b3570b6d758aeb7ae2f3b11f4dd69fe38930a0a2 |
|
MD5 | 75407791d0cfddcfc116188d2de31669 |
|
BLAKE2b-256 | 15091852b050b0ed36052769c2e6ea78f5cb22957149db7b83e7a289c96ff0d4 |