Gencove API and CLI tool
Project description
The Gencove CLI
What is Gencove?
Gencove is a high-throughput, cost-effective platform for genome sequencing and analysis, enabling a wide array of genomics applications across industries. Furthermore, it is the only enterprise analytics platform for low-pass whole genome sequencing (lpWGS).
The Gencove command-line interface (CLI) can be used to easily access the Gencove platform.
Main Features
It is most often used for:
- Uploading FASTQ files for analysis
- Downloading analysis results which include the following:
- Sequence (
.fastq.gz
) - Alignment (
.bam
,.bai
) - Imputation (
.vcf.gz
,.vcf.gz.tbi
,.vcf.gz.csi
)
- Sequence (
- Assigning metadata to Gencove samples
Before filing a bug report, please refer to the following link. Bugs should be reported here.
Installation
# install via PyPI
pip install gencove
# updating to latest version
pip install -U gencove
Documentation
Online documentation (with examples) is available at docs.gencove.com
API reference for publicly available endpoints: API Reference
Comprehensive CLI Documentation available: CLI Reference
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Hashes for gencove-2.7.2-py2.py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | af43ae9026bd2f455e6b6518fb8cdc59a2f2acd458796c32a6c810ded46b2dbb |
|
MD5 | c7643b4951db34f2ff266340a157f738 |
|
BLAKE2b-256 | 7acf40edbd7582b2417b6fd01c7b9a85436b9101969dff55993239ebcae0217e |