gene-trajectory 0.1.6

Compute gene trajectories

Python Gene Trajectory

This package is a Python implementation of GeneTrajectory, which is implemented in R.

Note that, although the implementation is equivalent, it will produce slightly different results to the R implementation because the signs of eigenvectors may differ and because of the randomness of K-means during the coarse_grain step.

Install

The development version of the package can be installed as

pip install gene-trajectory

The development version of the package can be installed as

pip install git+https://github.com/Klugerlab/GeneTrajectory-python.git

Tutorial

Please follow the Jupyter Notebook tutorials in the folder notebooks.