Skip to main content

Library for programmatically interacting with GenePattern from Python.

Project description

[![Version](https://img.shields.io/pypi/v/genepattern-python.svg)](https://pypi.python.org/pypi/genepattern-python) [![Build](https://travis-ci.org/genepattern/genepattern-python.svg?branch=master)](https://travis-ci.org/genepattern/genepattern-python) [![Documentation Status](https://img.shields.io/badge/docs-latest-brightgreen.svg?style=flat)](https://github.com/genepattern/example-notebooks/blob/master/GenePattern%20Python%20Tutorial.ipynb)

# GenePattern Python Library

This is a Python library for working with GenePattern programmatically. Behind the scenes, calls from this library execute the GenePattern REST API.

## Supported Python Versions

This library requires Python 3.4+. The bundled data submodule gp.data also requires [pandas](http://pandas.pydata.org/), although the rest of the module does not.

Python 2 Support: Support for Python 2 was removed in version 1.4.0. Python 2 users should use version 1.3.1.

## Installing

It is recommended to install this library from PIP. Simply execute the command below:

> pip install genepattern-python

## Upgrading

To upgrade to the latest version of the library, execute the command below:

> pip install genepattern-python –upgrade

## Tutorial

A tutorial on how to use the GenePattern Python Library is [available here](https://github.com/genepattern/example-notebooks/blob/master/GenePattern%20Python%20Tutorial.ipynb).

## “Connection Reset by Peer” Error

Connecting to the GenePattern public server now requires TLS 1.2+. Older versions of SSL and TLS will no longer work. If you’re attempting to connect and receiving a “Connection Reset by Peer” error, you will need to update the OpenSSL library associated with your Python installation.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for genepattern-python, version 1.4.5
Filename, size File type Python version Upload date Hashes
Filename, size genepattern-python-1.4.5.tar.gz (18.4 kB) File type Source Python version None Upload date Hashes View

Supported by

Pingdom Pingdom Monitoring Google Google Object Storage and Download Analytics Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page