Library for programmatically interacting with GenePattern from Python.
Project description
GenePattern Python Library
This is a Python library for working with GenePattern programmatically. Behind the scenes, calls from this library execute the GenePattern REST API.
Supported Python Versions
This library requires Python 3.6+. The bundled data submodule gp.data
also requires pandas, although the rest of the module does not.
Python 2 Support: Support for Python 2 was removed in version 1.4.0. Python 2 users should use version 1.3.1.
Installing
It is recommended to install this library from PIP. Simply execute the command below:
pip install genepattern-python
Upgrading
To upgrade to the latest version of the library, execute the command below:
pip install genepattern-python --upgrade
Tutorial
A tutorial on how to use the GenePattern Python Library is available here.
"Connection Reset by Peer" Error
Connecting to the GenePattern public server now requires TLS 1.2+. Older versions of SSL and TLS will no longer work. If you're attempting to connect and receiving a "Connection Reset by Peer" error, you will need to update the OpenSSL library associated with your Python installation.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Hashes for genepattern_python-22.1-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | f34851718a6ddd1ffa9613abbe492de79b3a96b51c0e4330c432c72c4cff9e82 |
|
MD5 | 2ba5d097a4083050a8bfaae05c2c3b5c |
|
BLAKE2b-256 | 50a8695f060dab481c099c21d7824da56790b082b695345ce404fd7ecb437e52 |