Utility functions to read bed and bgen files
Project description
geno-sugar
Utility functions to read bed and bgen files and facilitate genome-wide analyses. While this can be used as a standalone module, this module has been designed to be a building block of LIMIX2. LIMIX2 is a python module that makes available a large set of tools for genetic studies, including statistical methods for GWAS, interaction testing and variance component estimation.
Install
From terminal, it can be installed using pip:
pip install geno-sugar
Documentation
The public interface and a quick start in python are available at http://geno-sugar.readthedocs.io/.
Problems
If you encounter any problem, please, consider submitting a new issue.
Authors
- Francesco Paolo Casale - https://github.com/fpcasale
- Danilo Horta - https://github.com/horta
- Rachel Moore - https://github.com/rm18
- Oliver Stegle - https://github.com/ostegle
License
This project is licensed under the Apache License (Version 2.0, January 2004) - see the LICENSE file for details
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