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Utility functions to read bed and bgen files

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Utility functions to read bed and bgen files and facilitate genome-wide analyses. While this can be used as a standalone module, this module has been designed to be a building block of LIMIX2. LIMIX2 is a python module that makes available a large set of tools for genetic studies, including statistical methods for GWAS, interaction testing and variance component estimation.


From terminal, it can be installed using pip:

pip install geno-sugar


The public interface and a quick start in python are available at


If you encounter any problem, please, consider submitting a new issue.



This project is licensed under the Apache License (Version 2.0, January 2004) - see the LICENSE file for details

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