Python package genome annotations
Project description
genome_info_
A package to work with genomic intervals.
Install
If you dont already have numpy and scipy installed, it is best to download
Anaconda
, a python distribution that has them included.
https://continuum.io/downloads
Dependencies can be installed by:
pip install -r requirements.txt
PyPI install, presuming you have all its requirements installed:
pip install genome_info(not yet!!)
Usage
import genome_info_
genome = genome_info.GenomeInfo("hg38")
genome.chrom_sizes
genome.n_bases
genome.tss()
genome.tss(upstream=1000, downstream=1000)
Project details
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
genome_info-1.0.5.tar.gz
(463.2 kB
view hashes)
Built Distribution
Close
Hashes for genome_info-1.0.5-cp311-cp311-macosx_14_0_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 88739c02dfc9af100e28de628fa3201bff5928cdaedee289ce888d049f398b8f |
|
MD5 | 5541cbb692587e26a18494fcc7c7f072 |
|
BLAKE2b-256 | 3761eb05c37e534934a3b96aeb4b6c2fe02976f30daf972b85ad8899e839b5e7 |