genome_info 1.0.8

Python package genome annotations

genome_info_

A package to work with genomic intervals.

Install

If you dont already have numpy and scipy installed, it is best to download Anaconda, a python distribution that has them included.

    https://continuum.io/downloads

Dependencies can be installed by:

    pip install -r requirements.txt

PyPI install, presuming you have all its requirements installed:

    pip install genome_info(not yet!!)

Usage

import genome_info_
genome = genome_info.GenomeInfo("hg38")
genome.chrom_sizes

genome.n_bases

genome.tss()

genome.tss(upstream=1000, downstream=1000)