Import your genome into a SQLite database
Project description
genome-to-sqlite
Import your genome into a SQLite database.
How to install
$ pip install genome-to-sqlite
How to use
First, export your genome. This tool has only been tested against 23andMe so far. You can request an export of your genome from https://you.23andme.com/tools/data/download/
Now you can convert the resulting export.zip
file to SQLite like so:
$ genome-to-sqlite export.zip genome.db
A progress bar will be displayed. You can disable this using --silent
.
Importing genome [#----------------] 5% 00:01:33
You can explore the resulting data using Datasette like this:
$ datasette genome.db --config facet_time_limit_ms:1000
Bumping up the facet time limit is useful in order to enable faceting by chromosome:
http://127.0.0.1:8001/genome/genome?_facet=chromosome&_sort=position
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