genome_windows_generator
How do I install this package?
As usual, just download it using pip:
pip install genome_windows_generatorTests Coverage
Since some software handling coverages sometime get slightly different results, here’s three of them:
from genome_windows_generator import GenomeWindowsGenerator, NoisyWindowsGenerator
dg = NoisyWindowsGenerator(
assembly="hg19",
window_size=200,
batch_size=3,
buffer_size=5,
test_chromosomes=["chr1", "chr5"]
)The methods train, test returns two independant generator of the train data and test data respectivly.
This is package is mainly meant to be used with keras’s fit_generator.
model.fit_generator(
epochs=100,
generator=dg.generator(),
steps_per_epoch=dg.steps_per_epoch(),
validation_data=dg.validation_data(),
validation_steps=dg.validation_steps(),
)1 maintainer
Metadata
1 maintainer
Release files for genome-windows-generator 1.1.0
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| File | Size | Uploaded | Provenance | Actions |
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| genome_windows_generator-1.1.0.tar.gz | 6.1 kB | Without provenance | Details for genome_windows_generator-1.1.0.tar.gz |
Release files / genome_windows_generator-1.1.0.tar.gz
| Download URL | genome_windows_generator-1.1.0.tar.gz |
|---|---|
| Size | 6.1 kB |
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