GenomeNotebook (1.0.0)
A genome browser in your Jupyter notebook
Install
pip install genomenotebook
Upgrade
New versions of genomenotebook are released on a regular basis. Make sure to upgrade your installation to enjoy all the features.
pip install genomenotebook --upgrade
How to use
Create a simple genome browser with a search bar. The sequence appears when zooming in.
Tracks can be added to visualize your favorite genomics data. See Examples for more !!!!
import genomenotebook as gn
g=gn.GenomeBrowser(gff_path=gff_path, fasta_path=fasta_path, init_pos=10000, bounds=(0,100000))
g.show()
Documentation
1 maintainer
Metadata
1 maintainer
Release files for genomenotebook 1.0.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| genomenotebook-1.0.0.tar.gz | 21.6 MB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| genomenotebook-1.0.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 43.5 MB
Release files / genomenotebook-1.0.0.tar.gz
| Download URL | genomenotebook-1.0.0.tar.gz |
|---|---|
| Size | 21.6 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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|
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.0.1 CPython/3.11.11
|
Release files / genomenotebook-1.0.0-py3-none-any.whl
| Download URL | genomenotebook-1.0.0-py3-none-any.whl |
|---|---|
| Size | 21.9 MB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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|
BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.0.1 CPython/3.11.11
|
