genomenotebook 0.4.0

A genome browser in your Jupyter notebook

Getting Started

Documentation

https://dbikard.github.io/genomenotebook/

Install

pip install genomenotebook

How to use

Create a simple genome browser with a search bar. The sequence appears when zooming in.

#Using the example E. coli genome data from the package
import genomenotebook as gn
import os

data_path = gn.get_example_data_dir()
genome_path = os.path.join(data_path, "MG1655_U00096.fasta")
gff_path = os.path.join(data_path, "MG1655_U00096.gff3")

g=gn.GenomeBrowser(genome_path=genome_path, gff_path=gff_path)
g.show()

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