Skip to main content

A genome browser in your Jupyter notebook

Project description

Getting Started

Documentation

https://dbikard.github.io/genomenotebook/

Install

pip install genomenotebook

How to use

Create a simple genome browser with a search bar. The sequence appears when zooming in.

import genomenotebook as gn

g=gn.GenomeBrowser(gff_path=gff_path, genome_path=genome_path, init_pos=10000)
g.show()

Tracks can be added to visualize your favorite genomics data. See Examples for more !!!!

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

genomenotebook-0.6.1.tar.gz (21.4 MB view details)

Uploaded Source

Built Distribution

genomenotebook-0.6.1-py3-none-any.whl (21.6 MB view details)

Uploaded Python 3

File details

Details for the file genomenotebook-0.6.1.tar.gz.

File metadata

  • Download URL: genomenotebook-0.6.1.tar.gz
  • Upload date:
  • Size: 21.4 MB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/4.0.2 CPython/3.9.13

File hashes

Hashes for genomenotebook-0.6.1.tar.gz
Algorithm Hash digest
SHA256 08fb767a3cf3a16ae86de030a30e5459462a8092c316d98ce8fc0109f1f93291
MD5 983347acf1eeaa7d012d60807bfbc15f
BLAKE2b-256 dcce5b5514fafb0021a0556efc7c27828e037741f80c41706531bb7c1fdc03a6

See more details on using hashes here.

File details

Details for the file genomenotebook-0.6.1-py3-none-any.whl.

File metadata

File hashes

Hashes for genomenotebook-0.6.1-py3-none-any.whl
Algorithm Hash digest
SHA256 819f93f86ddbc9738f97f4401d3aa9a4fe2b823762a0fce15950392d6e72171f
MD5 036e2c78fd787c0c0dfb8a093fe02f9b
BLAKE2b-256 5c8825e1be60cbde2a7a85935f1d45e530f29a1097daf34bdbd5eb727198d7cd

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page