A genome browser in your Jupyter notebook
Project description
Getting Started
Documentation
https://dbikard.github.io/genomenotebook/
Install
pip install genomenotebook
How to use
Create a simple genome browser with a search bar. The sequence appears when zooming in.
import genomenotebook as gn
g=gn.GenomeBrowser(gff_path=gff_path, genome_path=genome_path, init_pos=10000)
g.show()
Tracks can be added to visualize your favorite genomics data. See
Examples for more !!!!
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
genomenotebook-0.6.2.tar.gz
(21.4 MB
view details)
Built Distribution
File details
Details for the file genomenotebook-0.6.2.tar.gz.
File metadata
- Download URL: genomenotebook-0.6.2.tar.gz
- Upload date:
- Size: 21.4 MB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.2 CPython/3.9.13
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | eef6f7a030c68b13190c0b8b78ea69261dbc3c9eb5c6d6aedae1230a1aee07a6 |
|
| MD5 | 5d72f40ec334d76949b76d38873e1559 |
|
| BLAKE2b-256 | 022d395000bcd989c2eb182ae4fbd79692c50ffbdc3fc7bb29d44ae5e4fe8c0f |
File details
Details for the file genomenotebook-0.6.2-py3-none-any.whl.
File metadata
- Download URL: genomenotebook-0.6.2-py3-none-any.whl
- Upload date:
- Size: 21.6 MB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.2 CPython/3.9.13
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | ac215702c3d9927ace07e139429e58573a73bab95da40ac5e552392dd57e1998 |
|
| MD5 | 973a13cb9df5365347144f670a0990c9 |
|
| BLAKE2b-256 | bd47a052fd8c7e47dc9c713326074cb7e4f5ed60444abcd4c9fa8637fcab40e2 |
