genomeshader 0.1.12

Fast visualization of genomic data

Genomeshader is a Rust/Python library for rapid visualization of read-level data spanning variants across huge numbers of samples.

Documentation for the API can be found on the documentation page.

Installation

pip is recommended for installation.

pip install genomeshader

Building from source

To build from source, follow the procedure below.

# Clone repository.
git clone https://github.com/broadinstitute/genomeshader.git
cd genomeshader

# Create a Python virtual environment and install Maturin.
# For more information on Maturin, visit https://github.com/PyO3/maturin .
python -mvenv venv
. venv/bin/activate
pip install maturin

# Build the library (with release optimizations) and install it in
# the currently active virtual environment.
maturin develop --release

Supported platforms

Genomeshader is compiled for Linux (x86_64) and MacOSX (x86_64, aarch64). Windows support is not currently available.

Getting help

If you encounter bugs or have questions/comments/concerns, please file an issue on our Github page.

Developers’ guide

For information on contributing to Genomeshader development, visit our developer documentation.