Experimental Python Bindings for querying GenomicsDB

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  • License: MIT License (MIT)
  • Author: GenomicsDB.org
  • Maintainer: GenomicsDB.org
  • Tags genomics, genomicsdb, variant, vcf, variant calls
  • Requires: Python >=3.9
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Project description

License: MIT pypi

GenomicsDB-Python

Experimental Python 3 Bindings to the native GenomicsDB library. Only queries are supported for now. For importing vcf files into GenomicsDB, use the command line tools - vcf2genomicsdb or gatk GenomicsDBImport.

Installation : Only Linux and MacOS are currently supported

Install genomicsdb binary wheels from PyPi with pip:

pip install genomicsdb

Or explicitly from a source distribution

# Download the source distribution from https://pypi.org/project/genomicsdb/#files as genomicsdb.source.tar.gz
tar xvf genomicsdb.source.tar.gz
cd genomicsdb-<version>
python setup.py install

Development

See instructions for local builds and running tests.

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Maintainers
Avatar for aleksey0 from gravatar.com aleksey0 Avatar for mlathara from gravatar.com mlathara Avatar for nalini from gravatar.com nalini

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These details have not been verified by PyPI
Meta
  • License: MIT License (MIT)
  • Author: GenomicsDB.org
  • Maintainer: GenomicsDB.org
  • Tags genomics, genomicsdb, variant, vcf, variant calls
  • Requires: Python >=3.9
Classifiers

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