Datastructures for manipulating, querying and plotting genomic data.
GenoPandas is a library that provides various datastructures to support manipulation, querying and plotting of genomic data in Python. To do so, GenoPandas provides several pandas-based data structures, such as the GenomicDataFrame and AnnotatedMatrix classes, which can be used to store different types of genomic data. For basic analyses, these classes also provide a variety of different manipulation and plotting functions.
PyIM’s documentation is available at jrderuiter.github.io/genopandas.
This software is released under the MIT license.
Initial release with GenomicsDataFrame + AnnotatedMatrix classes.
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