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genotype provides an automated pipipeline for comparinggenotypes from different assays.

Project description

Genotype Documentation Status Build Status

Manage SNP calling comparisons at Clinical Genomics. The package exposes a CLI and a bare bones web interface to visualize results stored in a SQLite database.


$ conda install -c bioconda pysam pyyaml sqlalchemy flask
$ pip install genotype==2.0.0-beta3


MIT. See the LICENSE file for more details.

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