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Project description
gentroutils
Set of Command Line Interface tools to process Open Targets Genetics GWAS data.
Installation
pip install gentroutils
Available commands
To see all available commands after installation run
gentroutils --help
Contribute
To be able to contribute to the project you need to set it up. This project runs on:
- python 3.10.8
- rye (package manager)
- uv (dependency manager)
To set up the project run
make dev
The command will install above dependencies (initial requirements are curl and bash) if not present and
install all python dependencies listed in pyproject.toml
. Finally the command will install pre-commit
hooks
requred to be run before the commit is created.
The project has additional dev
dependencies that include the list of packages used for testing purposes.
All of the dev
depnendencies are automatically installed by rye
.
To see all available dev commands
Run following command to see all available dev commands
make help
Manual testing of CLI module
To check CLI execution manually you need to run
rye run gentroutils
Project details
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