geoconv 0.0.7

Intrinsic Surface Convolutions for everyone!

GeoConv

Let's bend planes to curved surfaces.

Intrinsic mesh CNNs [1] operate directly on object surfaces, therefore expanding the application of convolutions to non-Euclidean data.

GeoConv is a library that provides end-to-end tools for deep learning on surfaces. That is, whether it is pre-processing your mesh files into a format that can be fed into neural networks, or the implementation of the intrinsic surface convolutions [1] themselves, GeoConv has you covered.

Implementation

While this library is theoretically motivated by the work of [1], [2] and [3] it also adds additional functionalities such as the freedom of specifying new kernels, preprocessing algorithms like the one from [4], as well as visualization and benchmark tools to verify your layer configuration, your pre-processing results or your trained models.

GeoConv provides the base layer ConvIntrinsic as a Tensorflow or Pytorch layer. Both implementations are equivalent. Only the ways in how they are configured slightly differ due to differences regarding Tensorflow and Pytorch. Check the minimal example below or the geoconv_examples-package for how you configure Intrinsic Mesh CNNs.

Installation

1. Install BLAS and CBLAS:

   sudo apt install libatlas-base-dev
   

2. Install geoconv:

   Installation Variant	Command
   GeoConv	pip install geoconv
   GeoConv + Tensorflow/Keras (CPU)	pip install geoconv[tensorflow]
   GeoConv + Tensorflow/Keras (GPU)	pip install geoconv[tensorflow_gpu]
   GeoConv + Pytorch (CPU)	pip install geoconv[pytorch] --extra-index-url https://download.pytorch.org/whl/cpu
   GeoConv + Pytorch (GPU)	pip install geoconv[pytorch] --extra-index-url https://download.pytorch.org/whl/cu118

3. If you want to run the FAUST example you also need to install:

   sudo apt install libflann-dev libeigen3-dev lz4
   pip install cython==0.29.37
   pip install pyshot@git+https://github.com/uhlmanngroup/pyshot@master
   

4. In case OpenGL context cannot be created:

   conda install -c conda-forge libstdcxx-ng
   

Minimal Example (TensorFlow)

from geoconv.tensorflow.layers.conv_geodesic import ConvGeodesic
from geoconv.tensorflow.layers.angular_max_pooling import AngularMaxPooling

import keras


def define_model(input_dim, output_dim, n_radial, n_angular):
     """Define a geodesic convolutional neural network"""

     signal_input = keras.layers.InputLayer(shape=(input_dim,))
     barycentric = keras.layers.InputLayer(shape=(n_radial, n_angular, 3, 2))
     signal = ConvGeodesic(
          amt_templates=32,  # 32-dimensional output
          template_radius=0.03,  # maximal geodesic template distance 
          activation="relu",
          rotation_delta=1  # Delta in between template rotations
     )([signal_input, barycentric])
     signal = AngularMaxPooling()(signal)
     logits = keras.layers.Dense(output_dim)(signal)

     model = keras.Model(inputs=[signal_input, barycentric], outputs=[logits])
     return model

Minimal Example (PyTorch)

from geoconv.pytorch.layers.conv_geodesic import ConvGeodesic
from geoconv.pytorch.layers.angular_max_pooling import AngularMaxPooling

from torch import nn


class GCNN(nn.Module):
     def __init__(self, input_dim, output_dim, n_radial, n_angular):
          super().__init__()
          self.geodesic_conv = ConvGeodesic(
               input_shape=[(None, input_dim), (None, n_radial, n_angular, 3, 2)],
               amt_templates=32,  # 32-dimensional output
               template_radius=0.03,  # maximal geodesic template distance 
               activation="relu",
               rotation_delta=1  # Delta in between template rotations
          )
          self.amp = AngularMaxPooling()
          self.output = nn.Linear(in_features=32, out_features=output_dim)

     def forward(self, x):
          signal, barycentric = x
          signal = self.geodesic_conv([signal, barycentric])
          signal = self.amp(signal)
          return self.output(signal)

Inputs and preprocessing

As visible in the minimal examples above, the intrinsic surface convolutional layer (here geodesic convolution) expects two inputs:

1. The signal defined on the mesh vertices (can be anything from descriptors like SHOT [5] to simple 3D-coordinates of the vertices).
2. Barycentric coordinates for signal interpolation in the format specified by the output of compute_barycentric_coordinates.

For the latter: GeoConv supplies you with the necessary preprocessing functions:

1. Use GPCSystemGroup(mesh).compute(u_max=u_max) on your triangle meshes (which are stored in a format that is supported by Trimesh, e.g. 'ply') to compute local geodesic polar coordinate systems with the algorithm of [4].
2. Use those GPC-systems and compute_barycentric_coordinates to compute the barycentric coordinates for the kernel vertices. The result can without further effort directly be fed into the layer.

For more thorough explanations on how GeoConv operates check out the geoconv_examples-package!

Cite

Using my work? Please cite this repository by using the "Cite this repository"-option of GitHub in the right panel.

Referenced Literature

[1]: Bronstein, Michael M., et al. "Geometric deep learning: Grids, groups, graphs, geodesics, and gauges." arXiv preprint arXiv:2104.13478 (2021).

[2]: Monti, Federico, et al. "Geometric deep learning on graphs and manifolds using mixture model cnns." Proceedings of the IEEE conference on computer vision and pattern recognition. 2017.

[3]: Poulenard, Adrien, and Maks Ovsjanikov. "Multi-directional geodesic neural networks via equivariant convolution." ACM Transactions on Graphics (TOG) 37.6 (2018): 1-14.

[4]: Melvær, Eivind Lyche, and Martin Reimers. "Geodesic polar coordinates on polygonal meshes." Computer Graphics Forum. Vol. 31. No. 8. Oxford, UK: Blackwell Publishing Ltd, 2012.

[5]: Tombari, Federico, Samuele Salti, and Luigi Di Stefano. "Unique signatures of histograms for local surface description." European conference on computer vision. Springer, Berlin, Heidelberg, 2010.