Downloads data and metadata from GEO and SRA and creates standard PEPs.
geofetch is a command-line tool that downloads sequencing data and metadata from GEO and SRA and creates standard PEPs. geofetch is hosted at pypi and documentation is hosted at code.databio.org/geofetch (source in the /docs folder).
You can convert the result of geofetch into bam files with the sra_convert pipeline.
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