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Downloads data and metadata from GEO and SRA and creates standard PEPs.

Project description

Build Status PEP compatible

geofetch is a command-line tool that downloads sequencing data and metadata from GEO and SRA and creates standard PEPs. geofetch is hosted at pypi and documentation is hosted at geofetch.databio.org (source in the /docs folder).

You can convert the result of geofetch into bam files with the sra_convert pipeline.

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Files for geofetch, version 0.5.0
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