Downloads data and metadata from GEO and SRA and creates standard PEPs.
geofetch is a command-line tool that downloads sequencing data and metadata from GEO and SRA and creates standard PEPs. geofetch is hosted at pypi and documentation is hosted at geofetch.databio.org (source in the /docs folder).
You can convert the result of geofetch into bam files with the sra_convert pipeline.
Release history Release notifications | RSS feed
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
|Filename, size||File type||Python version||Upload date||Hashes|
|Filename, size geofetch-0.6.0.tar.gz (21.5 kB)||File type Source||Python version None||Upload date||Hashes View|