Downloads data and metadata from GEO and SRA and creates standard PEPs.
Project description
# <img src=”docs/img/geofetch_logo.svg” alt=”geofetch logo” height=”70”/>
[](https://travis-ci.org/pepkit/geofetch) [](http://pepkit.github.io)
geofetch is a command-line tool that downloads sequencing data and metadata from GEO and SRA and creates [standard PEPs](http://pepkit.github.io). geofetch is hosted at [pypi](https://pypi.org/project/geofetch/) and documentation is hosted at [geofetch.databio.org](http://geofetch.databio.org) (source in the [/docs](/docs) folder).
You can convert the result of geofetch into bam files with the [sra_convert](https://github.com/pepkit/sra_convert) pipeline.
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