Downloads data and metadata from GEO and SRA and creates standard PEPs.
Project description
# <img src=”docs/img/geofetch_logo.svg” alt=”geofetch logo” height=”70”>
[![PEP compatible](http://pepkit.github.io/img/PEP-compatible-green.svg)](http://pepkit.github.io) [![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
geofetch is a command-line tool that downloads sequencing data and metadata from GEO and SRA and creates [standard PEPs](http://pepkit.github.io). geofetch is hosted at [pypi](https://pypi.org/project/geofetch/) and documentation is hosted at [geofetch.databio.org](http://geofetch.databio.org) (source in the [/docs](/docs) folder).
You can convert the result of geofetch into unmapped bam or fastq files with the included sraconvert command.
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