Skip to main content

Downloads data and metadata from GEO and SRA and creates standard PEPs.

Project description

# <img src=”docs/img/geofetch_logo.svg” alt=”geofetch logo” height=”70”>

[![PEP compatible](http://pepkit.github.io/img/PEP-compatible-green.svg)](http://pepkit.github.io) [![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)

geofetch is a command-line tool that downloads sequencing data and metadata from GEO and SRA and creates [standard PEPs](http://pepkit.github.io). geofetch is hosted at [pypi](https://pypi.org/project/geofetch/) and documentation is hosted at [geofetch.databio.org](http://geofetch.databio.org) (source in the [/docs](/docs) folder).

You can convert the result of geofetch into unmapped bam or fastq files with the included sraconvert command.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

geofetch-0.8.0.tar.gz (32.1 kB view hashes)

Uploaded Source

Built Distribution

geofetch-0.8.0-py3-none-any.whl (26.8 kB view hashes)

Uploaded Python 3

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page