geoips-clavrx 1.18.1

Geolocated Information Processing System

# # # This source code is subject to the license referenced at
# # # https://github.com/NRLMMD-GEOIPS.

CLAVR-x GeoIPS Plugin Package

The geoips_clavrx package is a GeoIPS-compatible plugin, intended to be used within the GeoIPS ecosystem. Please see the GeoIPS Documentation for more information on the GeoIPS plugin architecture and base infrastructure.

Package Overview

The geoips_clavrx package provides the capability for reading and plotting data files produced from the Clouds for AVHRR Extended (CLAVR-x) package.

This package also contains wrappers for installing and running the main CLAVR-x package, prior to processing the CLAVR-x outputs through GeoIPS.

This package does not currently include complete build of the external CLAVR-x package from source, but uses a pre-built binary from the University of Wisconsin gitlab page. Future releases intend to include the option for building CLAVR-x directly from source if and when needed.

System Requirements

• geoips >= 1.18.0
• Test data repos contained in $GEOIPS_TESTDATA_DIR for geoips tests to pass.

For full clavrx installation, and clavrx through GeoIPS test scripts

• GEOIPS_ANCILDAT environment variable set for clavrx ancillary data population (ancillary data will be populated by test scripts if it does not exist already within GEOIPS_ANCILDAT/clavrx directory).
• GEOIPS_DEPENDENCIES_DIR environment variable for clavrx installation and test.
• GEOIPS_PACKAGES_DIR environment variable containing geoips_clavrx repo clone, for clavrx template configuration files for tests.
• GEOIPS_OUTDIRS environment variable for both clavrx and geoips test outputs.

IF REQUIRED: Install base geoips package

SKIP IF YOU HAVE ALREADY INSTALLED BASE GEOIPS ENVIRONMENT

If GeoIPS Base is not yet installed, follow the installation instructions within the geoips source repo documentation.

Install geoips_clavrx package

    # Ensure GeoIPS Python environment is enabled.

    git clone https://github.com/NRLMMD-GEOIPS/geoips_clavrx $GEOIPS_PACKAGES_DIR/geoips_clavrx
    pip install -e $GEOIPS_PACKAGES_DIR/geoips_clavrx
    geoips config create-registries

Install CLAVR-x and required dependencies

Follow installation of full pipeline on the CLAVRx pipeline docs

Note the clavrx_proc_to_geoips.sh test script expects complete clavrx installation in the standard geoips locations, and will complete successfully if you follow the instructions in the clavrx/README.md.

Test geoips_clavrx installation

    # Ensure GeoIPS Python environment is enabled.

    # Install the clavrx test data repo
    geoips config install test_data_clavrx

    # Run geoips only tests, on pre-existing CLAVR-x outputs
    $GEOIPS_PACKAGES_DIR/geoips_clavrx/tests/scripts/abi.imagery_clean.sh Cloud-Fraction
    $GEOIPS_PACKAGES_DIR/geoips_clavrx/tests/scripts/ahi.imagery_clean.sh Cloud-Base-Height

    # Run clavrx through geoips tests, if you did the full clavrx+geoips installation
    $GEOIPS_PACKAGES_DIR/geoips_clavrx/tests/scripts/clavrx_proc_to_geoips.sh ahi
    $GEOIPS_PACKAGES_DIR/geoips_clavrx/tests/scripts/clavrx_proc_to_geoips.sh abi

    # Run all tests, both geoips only and CLAVR-x preprocessing + GeoIPS
    cd $GEOIPS_PACKAGES_DIR/geoips_clavrx
    pytest