Fast, structure-based, alignment-free protein embedding
Geometricus Represents Protein Structures as Shape-mers derived from Moment Invariants
A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
See the documentation or read the preprint.
Geometricus is a Python (3.7+) package with NumPy, SciPy, Numba and ProDy as dependencies.
pip install geometricus
See the Getting Started page for example usage.
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