Library to parse, edit and handle in memory GFA graphs
Project description
GFAGraphs - A Python GFA library
[!WARNING]
A paper is in preparation about this work. If you consider to use this tool, please contact the author for attribution.
This Python library aims to be an abstraction layer for GFA file format.
[!WARNING]
The old version ofgfagraphs
has been deprecated (since v0.3.0), in favour ofpgGraphs
. Usinggfagraphs
orpgGraphs
to import resolves now in using the same library. In a near future,pgGraphs
namespace will be deprecated.
Package pgGraphs
/gfagraphs
The package is organized in 4 modules:
gfagraphs.abstractions
contains abstractions over GFA formatsgfagraphs.gfaparser
contains an abstract class for parsing and saving GFA file formatgfagraphs.graph
contains the mainGraph
class that represents a GFA graph in memory, and edit functionsgfagraphs.networkx
conains an abstract class for visualization and modelization of GFA in a NetworkX object
[!NOTE]
Want to contribute? Feel free to open a PR on an issue about a missing, buggy or incomplete feature!
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