ghga-validator 1.2.0

GHGA Validator - A Python library and command line utility to validate metadata

Ghga Validator

GHGA Validator - A Python library and command line utility to validate metadata

Description

ghga-validator is a Python library and command line utility to validate metadata w.r.t. its compliance to the GHGA Metadata Model. It takes metadata encoded in JSON of YAML format and produces a validation report in JSON format.

Installation

We recommend installing the latest version of ghga-validator using pip:

pip install -U ghga-validator

Usage

Usage: ghga-validator [OPTIONS]

  GHGA Validator

  ghga-validator is a command line utility to validate metadata w.r.t. its
  compliance to the GHGA Metadata Model. It takes metadata encoded in JSON of
  YAML format and produces a validation report in JSON format.

Options:
  -s, --schema PATH               Path to metadata schema (modelled using
                                  LinkML)  [required]
  -i, --input FILE                Path to submission file in JSON format to be
                                  validated  [required]
  -r, --report FILE               Path to resulting validation report
                                  [required]
  --target-class TEXT             The root class name
  --install-completion [bash|zsh|fish|powershell|pwsh]
                                  Install completion for the specified shell.
  --show-completion [bash|zsh|fish|powershell|pwsh]
                                  Show completion for the specified shell, to
                                  copy it or customize the installation.
  --help                          Show this message and exit.

Development

For setting up the development environment, we rely on the devcontainer feature of vscode in combination with Docker Compose.

To use it, you have to have Docker Compose as well as vscode with its "Remote - Containers" extension (ms-vscode-remote.remote-containers) installed. Then open this repository in vscode and run the command Remote-Containers: Reopen in Container from the vscode "Command Palette".

This will give you a full-fledged, pre-configured development environment including:

• infrastructural dependencies of the service (databases, etc.)
• all relevant vscode extensions pre-installed
• pre-configured linting and auto-formating
• a pre-configured debugger
• automatic license-header insertion

Moreover, inside the devcontainer, a convenience commands dev_install is available. It installs the service with all development dependencies, installs pre-commit.

The installation is performed automatically when you build the devcontainer. However, if you update dependencies in the ./setup.cfg or the ./requirements-dev.txt, please run it again.

License

This repository is free to use and modify according to the Apache 2.0 License.