ghq
Gauss-Hermite quadrature in JAX
Installed easily from PyPI:
pip install ghq
Univariate Gaussian integrals
Gauss-Hermite quadrature is a method for numerically integrating functions of the form:
$$ \int_{-\infty}^{\infty} f(x) \mathbf{N}(x \mid \mu, \sigma^2) dx \approx \sum_{i=1}^\mathsf{degree} w_i f(x_i), $$
where $\lbrace x_i, w_i \rbrace_{i=1}^\mathsf{degree}$ are chosen deterministically. The integral approximation can be executed easily with ghq:
ghq.univariate(f, mu, sigma, degree=32)
where f: Callable[[float], Array] is a JAX vectorisable function and degree is an optional argument controlling the number of function evalutions, increasing degree increases the accuracy of the integral. (Note that the output of f can be multivariate but the input is univariate).
Univariate unbounded integrals
More generally, we can use an importance-sampling-like approach to integrate functions of the form:
$$ \int_{-\infty}^{\infty} f(x) dx = \int_{-\infty}^{\infty} \frac{f(x)}{\mathbf{N}(x \mid \mu, \sigma^2)} \mathbf{N}(x \mid \mu, \sigma^2) dx \approx \sum_{i=1}^\mathsf{degree} w_i \frac{f(x_i)}{\mathbf{N}(x_i \mid \mu, \sigma^2)}, $$
and with ghq:
ghq.univariate_importance(f, mu, sigma, degree=32)
Univariate half-bounded integrals
Consider lower-bounded integrals of the form:
$$ \int_{a}^{\infty} f(x) dx =\int_{-\infty}^{\infty} f(a + e^y) e^y dy \approx \sum_{i=1}^\mathsf{degree} w_i \frac{f(a + e^{y_i}) e^{y_i}}{\mathbf{N}(y_i \mid \mu, \sigma^2)}, $$
where we use the transformation $y = \log(x - a)$ to map the lower-bounded integral to an unbounded integral. This can be approximated with ghq:
ghq.univariate_importance(f, mu, sigma, degree=32, lower=a)
or for upper-bounded integrals over $[-\infty, b)$ using transformation $y = \log(b - x)$:
ghq.univariate_importance(f, mu, sigma, degree=32, upper=b)
Univariate bounded integrals
For doubly-bounded integrals in $[a, b)$ we have
$$ \int_{a}^{b} f(x) dx = \int_{-\infty}^{\infty} f\left(a + (b-a)\text{logit}^{-1}(y)\right) (b-a) \text{logit}^{-1}(y) \left(1-\text{logit}^{-1}(y)\right) dy, $$
where we use the transfomation $y=\text{logit}(\frac{x-a}{b-a})$ with $\text{logit}(u)=\log\frac{u}{1-u}$ and $\text{logit}^{-1}(v) = \frac{1}{1+e^{-v}}$.
In ghq we have:
ghq.univariate_importance(f, mu, sigma, degree=32, lower=a, upper=b).
The Stan reference manual provides an excellent reference for transformations of variables.
Multivariate Gaussian integrals
$$ \int f(x) \mathbf{N}(x \mid \mu, \Sigma) dx, $$
in ghq is:
ghq.multivariate(f, mu, Sigma, degree=32)
where f: Callable[[Array], Array] is a function that takes a multivariate input.
Beware though that multivariate Gauss-Hermite quadrature has complexity
$O(\text{degree}^d)$ where $d$ is the dimension of the integral, so it is not feasible
for high-dimensional integrals.
Multivariate unbounded integrals
For generic multivariate integrals
$$ \int f(x) dx = \int \frac{f(x)}{\mathbf{N}(x \mid \mu, \Sigma)} \mathbf{N}(x \mid \mu, \Sigma) dx, $$
in ghq is:
ghq.multivariate_importance(f, mu, Sigma, degree=32)
Although as above this is not feasible for high-dimensional integrals due to $O(\text{degree}^d)$ cost. Additionally only expect good performance when the domain of $f$ is approximately the same as the domain of high probability mass for the Gaussian distribution.
Multivariate bounded integrals
Coming soon...
Citation
If you use ghq in your research, please cite it using the following BibTeX entry:
@software{ghq,
author = {Duffield, Samuel},
title = {ghq: Gauss-Hermite quadrature in JAX},
year = {2024},
url = {https://github.com/SamDuffield/ghq}
}
Metadata
Release files for ghq 0.0.5
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| ghq-0.0.5.tar.gz | 9.7 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| ghq-0.0.5-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 19.5 kB
Release files / ghq-0.0.5.tar.gz
| Download URL | ghq-0.0.5.tar.gz |
|---|---|
| Size | 9.7 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
50577b99b8f13b13c22c59255937b2477e2fcda585bbde5ca880cce8fa2af42c
|
|
BLAKE2b-256 checksum How to use checksums |
58b4569d9a7e1ed178c93a5b79efd0ec1115470f2ff442891291fd5f8e175842
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.1 CPython/3.9.10
|
Release files / ghq-0.0.5-py3-none-any.whl
| Download URL | ghq-0.0.5-py3-none-any.whl |
|---|---|
| Size | 9.7 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
890b349114ffdb4d007ab92aa1ef3273c807a594f790b154fb0c37aaab57cb3b
|
|
BLAKE2b-256 checksum How to use checksums |
001fd453609183edb791296049a424bf4a56a147ec3e3e7a04ccdbd5295d196b
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.1 CPython/3.9.10
|