gisaid 1.0.1b0

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gisaid-uploader

Simplified uploads to GISAID

1. Register for a GISAID account

2. Email GISAID & request a client ID

Authenticate once:

    >>> import gisaid as gs
    >>> gs.GiSaid(authenticate=True, client_id='foo',
    >>>              username='bar', password='foobar', filename='authfile.json')
    "Authentication successful"

CSV + fasta file:

    >>> import gisaid as gs
    >>> files = ["upload.csv", "fasta.fa"]
    >>> x = gs.GiSaid(files)
    >>> x.upload()
    "Upload successful"

Collated CSV:

    >>> import gisaid as gs
    >>> files = ["collated", "upload.csv"]
    >>> x = gs.GiSaid(files)
    >>> x.upload()
    "Upload successful"