Multidimensional data visualization for genomics
Project description
The glue-genes meta-package
glue genes is a custom version of the glue software for the visual exploration of genomics data, developed in partnership with The Jackson Laboratory.
Features
glue genes provides all the core features of glue:
- Interactive, linked statistical graphics
- A user interface for 'glueing' together multiple datasets with complicated relationships
- A highly scriptable and extendable environment
In addition, glue genes provides:
- Data loaders for genomics data file formats such as .bed, .bigwig, .h5ad, and .loom
- Viewers including: 2D Heatmap, Small Multiples, QTL Viewer
- Menubar plug-ins to facilitate analysis of single-cell transcriptomics data
Install
See the glue genes documentation for installation help.
We recommend installing into a new virtual environment. To install the current stable version use:
pip install glue-genes[qt6]
To install the latest development version we recommend the following procedure in a new virtual environment:
`pip install "glue-genes[qt6]@git+https://git@github.com/gluesolutions/glue-genes.git"``
Usage
After installation, glue (with the glue genes plug-ins loaded) can be invoked at the terminal:
glue
Development
glue genes is under active development. Please file all bug reports as github issues.
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