gmArrayFilter 1.0.2

A python package to filter SNP array data

split merged chip file

$ gmArray filter array-split

array.file split.dir –prefix prefix

filter chip data

$ gmArray filter array-filer-web

–array-dir uploads/project/605b06231ac54fdcc821c83f –array-dir public/publicData/array –genome-dir /home/kent/data/gmap/gmapdb/data –out-dir public/score/605b06431ac54fdcc821c845 –array-annotation-dir public/array –options ‘{“mutant”:[“mutant”],”wild”:[“wild”],”mutant_parent”:[],”wild_parent”:[],”array”:”660K”,”child_max_na”:0,”parent_max_na”:1,”mutant_gt”:”homozygous”,”wild_gt”:”heterozygous”,”mutant_parent_gt”:”homozygous”,”wild_parent_gt”:”homozygous”,”strict”:0,”density_window”:1000000,”density_step”:500000,”genomes”:[“CSv1.0”,”CSv2.0”]}’