Python packcage for caidentifying Genetic iNTeractions from combinatorial screening data.
Project description
gnt
Python package for identifying Genetic iNTeractions from combinatorial screening data.
Free software: MIT license
Documentation: https://gnt.readthedocs.io.
Tutorial
To install:
$ pip install gnt
Basic command line usage
$ gnt "https://raw.githubusercontent.com/PeterDeWeirdt/bigpapi/master/data/processed/bigpapi_lfcs.csv" example_output --control CD81 --control "HPRT intron"
Basic python usage
import gnt
import pandas as pd
lfcs = pd.read_csv('https://raw.githubusercontent.com/PeterDeWeirdt/bigpapi/master/data/processed/bigpapi_lfcs.csv')
guide_residuals, model_info = gnt.get_guide_residuals(lfcs, ['CD81', 'HPRT intron'], scale=True)
gene_scores = gnt.get_gene_residuals(guide_residuals, 'scaled_residual_z')
TODO
Credits
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.
History
0.1.0 (2020-06-29)
First release on PyPI.
Release history Release notifications | RSS feed
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