Python Library to generate statistics on a Gene Ontology (GO) release
Project description
go-stats python tool
Generate statistics for a GO release based on a GOLr instance
Install
pip install go-stats
Usage
import go_stats
json_stats = go_stats.compute_stats('http://golr-aux.geneontology.io/solr/')
go_stats.write_json("stats.json", json_stats)
tsv_stats = go_stats.create_text_report(json_stats)
go_stats.write_text("stats.tsv", tsv_stats)
json_meta = go_stats.create_meta(json_stats)
go_stats.write_json("meta.json", json_meta)
Note: current GOLr instance is http://golr-aux.geneontology.io/solr/
Project details
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go-stats-1.1.2.tar.gz
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