gopher
Gene ontology enrichment analysis using protein expression.
Gopher uses a Mann-Whitney U Test to look for enriched gene ontology terms that are present when proteins are ranked by a quantitative value, such as the difference between two conditions or the abundance of the protein.
See the documentation at https://TalusBio.github.io/gopher
Installation
Gopher can be pip installed using:
pip install gopher-enrich
TLDR
import gopher # import the package
gopher.test_enrichment(proteins=protein_quant) # run the enrichment
1 maintainer
Release files for gopher-enrich 0.3.1
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| gopher_enrich-0.3.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 1.3 MB
Release files / gopher_enrich-0.3.1.tar.gz
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