goreverselookup 1.0.33

Python library for Gene Ontology Reverse Lookup

GOReverseLookup

GOReverseLookup is a Python package designed for Gene Ontology Reverse Lookup. It serves the purpose of identifying statistically significant genes within a set of selected Gene Ontology Terms.

Getting Started

Dependencies

• Describe any prerequisites, libraries, OS version, etc., needed before installing program.
• ex. Windows 10

Installing

• How/where to download your program
• Any modifications needed to be made to files/folders

Executing program

• How to run the program
• Step-by-step bullets

code blocks for commands

Help

Any advise for common problems or issues.

command to run if program contains helper info

Authors

Contributors names and contact info

ex. Dominique Pizzie
ex. @DomPizzie

Version History

• 0.2
  • Various bug fixes and optimizations
  • See commit change or See release history
• 0.1
  • Initial Release

License

This project is licensed under the [NAME HERE] License - see the LICENSE.md file for details

Acknowledgments

Inspiration, code snippets, etc.

• awesome-readme
• PurpleBooth
• dbader
• zenorocha
• fvcproductions

Known limitations: When using asynchronous querying for GO term products, if one of the requests inside a batch of requests exceeds the 'goterm_gene_query' timeout value (one of the settings), the entire batch of product queries will fail. This usually happens when the user attempts to collect products of GO terms with millions of more annotated genes. For us, an experimental 'goterm_gene_query' timeout value that successfully queris GO terms with ~1 million annotated genes is 240 seconds.