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NetworkX for genotype-phenotype maps.

Project description


# GPGraph

**Genotype-phenotype maps in NetworkX**

Port a `GenotypePhenotypeMap` to a [NetworkX Digraph](https://networkx.github.io/).

## Basic Example

GPGraph follows NetworkX syntax. Initialize a graph, add the
genotype-phenotype map object, and draw the graph. This library even
comes with a draw method, `draw_flattened`, suited for genotype-phenotype maps.

```python
from gpmap.simulate import MountFujiSimulation
from gpgraph import GenotypePhenotypeGraph, draw_flattened

# Simulate a genotype-phenotype map
sim = MountFujiSimulation.from_length(4)
sim.set_roughness((-1,1))

# Turn the genotype-phenotype map into a networkx object
G = GenotypePhenotypeGraph()
G.add_gpm(gpm)

# Draw the graph
draw_flattened(G, with_labels=False, node_size=100)
```
<img src="docs/_img/readme-fig.png" width="350">


## Install

Clone this repo and install with `pip`:

```
pip install -e .
```


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