No project description provided
Project description
gpl wrapper
This is a wrapper to run the GRIDSS-PURPLE-LINX tool. The original nextflow pipeline is here. I have modified the docker image to make it compatible with our working environment.
Additionally, hg38 for hmftools is harcoded for the "chr"-prefixed reference genome. So, we have added a previous step to reheader both bams and input vcfs so they also include the prefix. Our modified repo is here
Installation
pip install gpl-wrapper
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
gpl_wrapper-0.1.1.tar.gz
(12.5 kB
view hashes)
Built Distribution
Close
Hashes for gpl_wrapper-0.1.1-py3-none-any.whl
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | c80992f3e4f579dd305b7f95ccbfa109695cf1b137a75f4c1a249fef7c5136ae |
|
| MD5 | e42286ac87eebc3780bbe2ad1a15a30d |
|
| BLAKE2b-256 | 4b45e397086b64b17b5499956aae33eb26c65e8cf005709774eece61cf1c8245 |
